Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2744659..2744813 | Replicon | chromosome |
| Accession | NZ_AP022431 | ||
| Organism | Enterobacter kobei strain STW0522-51 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2744675..2744778 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2744659..2744813 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF35_RS13000 | 2740937..2742379 | + | 1443 | WP_045134186.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JLF35_RS13005 | 2742485..2742724 | + | 240 | WP_008500472.1 | YebV family protein | - |
| JLF35_RS13010 | 2742758..2743402 | - | 645 | WP_193970476.1 | protein-serine/threonine phosphatase | - |
| JLF35_RS13015 | 2743570..2744511 | + | 942 | WP_071922111.1 | VirK/YbjX family protein | - |
| - | 2744659..2744813 | + | 155 | - | - | Antitoxin |
| - | 2744675..2744778 | - | 104 | - | - | Toxin |
| JLF35_RS13020 | 2744917..2745255 | - | 339 | WP_071922110.1 | YebY family protein | - |
| JLF35_RS13025 | 2745272..2746141 | - | 870 | WP_023330712.1 | copper homeostasis membrane protein CopD | - |
| JLF35_RS13030 | 2746143..2746514 | - | 372 | WP_014884301.1 | CopC domain-containing protein YobA | - |
| JLF35_RS13035 | 2746652..2746882 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| JLF35_RS13040 | 2746993..2747643 | + | 651 | WP_193970475.1 | carbon-nitrogen hydrolase family protein | - |
| JLF35_RS13045 | 2747668..2748330 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35639 NZ_AP022431:c2744778-2744675 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT35639 NZ_AP022431:2744659-2744813 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
