Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2064633..2064904 | Replicon | chromosome |
| Accession | NZ_AP022409 | ||
| Organism | Escherichia coli strain STW0522-31 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2064763..2064866 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2064633..2064904 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLE49_RS09835 | 2061188..2061850 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JLE49_RS09840 | 2061874..2062530 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JLE49_RS09845 | 2062632..2062862 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLE49_RS09850 | 2063001..2063375 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| JLE49_RS09855 | 2063379..2064251 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| JLE49_RS09860 | 2064264..2064605 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2064633..2064904 | - | 272 | - | - | Antitoxin |
| - | 2064763..2064866 | + | 104 | - | - | Toxin |
| JLE49_RS09865 | 2065001..2065657 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| JLE49_RS09870 | 2065658..2065849 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JLE49_RS09875 | 2065954..2066190 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JLE49_RS09880 | 2066308..2067747 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35599 NZ_AP022409:2064763-2064866 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT35599 NZ_AP022409:c2064904-2064633 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
