Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | PumA-relB/COG3657-dnstrm_HI1420 |
Location | 4588609..4589192 | Replicon | chromosome |
Accession | NZ_AP022373 | ||
Organism | Providencia rettgeri strain BML2531 |
Toxin (Protein)
Gene name | PumA | Uniprot ID | - |
Locus tag | G7Y73_RS21300 | Protein ID | WP_096863599.1 |
Coordinates | 4588890..4589192 (-) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | G7Y73_RS21295 | Protein ID | WP_004265229.1 |
Coordinates | 4588609..4588893 (-) | Length | 95 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
G7Y73_RS21270 | 4583770..4584747 | - | 978 | WP_004265237.1 | 6-phosphofructokinase | - |
G7Y73_RS21275 | 4585154..4586098 | - | 945 | WP_004265235.1 | phosphatidate cytidylyltransferase | - |
G7Y73_RS21280 | 4586095..4586736 | - | 642 | WP_094961883.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
G7Y73_RS21285 | 4586974..4587726 | - | 753 | WP_004265231.1 | M48 family metallopeptidase | - |
G7Y73_RS21290 | 4587945..4588526 | - | 582 | WP_004265230.1 | HutD family protein | - |
G7Y73_RS21295 | 4588609..4588893 | - | 285 | WP_004265229.1 | putative addiction module antidote protein | Antitoxin |
G7Y73_RS21300 | 4588890..4589192 | - | 303 | WP_096863599.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
G7Y73_RS21305 | 4589448..4590017 | - | 570 | WP_110592812.1 | Spy/CpxP family protein refolding chaperone | - |
G7Y73_RS21310 | 4590168..4590866 | + | 699 | WP_004265224.1 | envelope stress response regulator transcription factor CpxR | - |
G7Y73_RS21315 | 4590863..4592233 | + | 1371 | WP_164565639.1 | envelope stress sensor histidine kinase CpxA | - |
G7Y73_RS21320 | 4592705..4594141 | + | 1437 | WP_164565640.1 | capsule assembly Wzi family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11433.37 Da Isoelectric Point: 10.0723
>T35502 WP_096863599.1 NZ_AP022373:c4589192-4588890 [Providencia rettgeri]
MITVLTTECFDSWIKNLRDIRAKTKILMRIRRLKNGNYGDVQPIGDGFSELRVHEGQGYRVYLKQKNNVIVILLCGGTKA
TQQKDIHKAKLLFGEVEGEL
MITVLTTECFDSWIKNLRDIRAKTKILMRIRRLKNGNYGDVQPIGDGFSELRVHEGQGYRVYLKQKNNVIVILLCGGTKA
TQQKDIHKAKLLFGEVEGEL
Download Length: 303 bp
>T35502 NZ_AP022373:c4589192-4588890 [Providencia rettgeri]
ATGATCACGGTTCTAACAACGGAATGTTTTGATAGTTGGATCAAAAATCTTAGAGATATTCGAGCTAAAACTAAAATTCT
AATGAGAATTAGGCGGTTAAAAAATGGAAATTATGGTGATGTTCAACCCATTGGTGATGGCTTTTCGGAACTGAGGGTAC
ATGAAGGACAAGGGTATCGTGTTTATCTAAAGCAGAAAAACAATGTTATTGTAATTTTACTTTGTGGTGGGACAAAGGCA
ACGCAGCAGAAGGATATCCATAAAGCTAAACTCCTTTTTGGTGAAGTTGAGGGGGAACTATGA
ATGATCACGGTTCTAACAACGGAATGTTTTGATAGTTGGATCAAAAATCTTAGAGATATTCGAGCTAAAACTAAAATTCT
AATGAGAATTAGGCGGTTAAAAAATGGAAATTATGGTGATGTTCAACCCATTGGTGATGGCTTTTCGGAACTGAGGGTAC
ATGAAGGACAAGGGTATCGTGTTTATCTAAAGCAGAAAAACAATGTTATTGTAATTTTACTTTGTGGTGGGACAAAGGCA
ACGCAGCAGAAGGATATCCATAAAGCTAAACTCCTTTTTGGTGAAGTTGAGGGGGAACTATGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10454.13 Da Isoelectric Point: 4.5983
>AT35502 WP_004265229.1 NZ_AP022373:c4588893-4588609 [Providencia rettgeri]
MNTKLKEFDIAEYLNSEEEIQMYLNEILEEGDPSLVLAALGDIAKARNMSQLAKEVGMSREGLYKALSGQGNPTFMTIIK
IVNSLGLKLQFKSI
MNTKLKEFDIAEYLNSEEEIQMYLNEILEEGDPSLVLAALGDIAKARNMSQLAKEVGMSREGLYKALSGQGNPTFMTIIK
IVNSLGLKLQFKSI
Download Length: 285 bp
>AT35502 NZ_AP022373:c4588893-4588609 [Providencia rettgeri]
ATGAATACTAAATTAAAAGAATTTGATATCGCTGAGTATTTAAACAGTGAAGAAGAAATACAAATGTATCTAAACGAAAT
TCTAGAAGAAGGTGACCCTAGTCTAGTTCTCGCTGCACTTGGTGATATTGCGAAGGCAAGAAATATGAGCCAATTAGCTA
AAGAAGTTGGAATGAGTCGTGAAGGTTTATATAAGGCGCTATCAGGACAGGGAAATCCAACATTTATGACGATTATAAAA
ATCGTTAATTCTCTCGGATTAAAGCTACAGTTTAAGAGTATCTAA
ATGAATACTAAATTAAAAGAATTTGATATCGCTGAGTATTTAAACAGTGAAGAAGAAATACAAATGTATCTAAACGAAAT
TCTAGAAGAAGGTGACCCTAGTCTAGTTCTCGCTGCACTTGGTGATATTGCGAAGGCAAGAAATATGAGCCAATTAGCTA
AAGAAGTTGGAATGAGTCGTGAAGGTTTATATAAGGCGCTATCAGGACAGGGAAATCCAACATTTATGACGATTATAAAA
ATCGTTAATTCTCTCGGATTAAAGCTACAGTTTAAGAGTATCTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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