Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /RES-TIGR02293 |
| Location | 2594300..2595216 | Replicon | chromosome |
| Accession | NZ_AP022373 | ||
| Organism | Providencia rettgeri strain BML2531 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | G7Y73_RS11905 | Protein ID | WP_164565295.1 |
| Coordinates | 2594758..2595216 (+) | Length | 153 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | D4BTW8 |
| Locus tag | G7Y73_RS11900 | Protein ID | WP_004254502.1 |
| Coordinates | 2594300..2594761 (+) | Length | 154 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G7Y73_RS11870 | 2589960..2590574 | + | 615 | WP_164565293.1 | LysE family translocator | - |
| G7Y73_RS11875 | 2590604..2591077 | - | 474 | WP_036957747.1 | NUDIX domain-containing protein | - |
| G7Y73_RS11880 | 2591429..2592070 | - | 642 | WP_004254492.1 | leucine efflux protein LeuE | - |
| G7Y73_RS11885 | 2592544..2593245 | + | 702 | WP_164565294.1 | AzlC family ABC transporter permease | - |
| G7Y73_RS11890 | 2593242..2593556 | + | 315 | WP_094960595.1 | AzlD domain-containing protein | - |
| G7Y73_RS11895 | 2593744..2594211 | + | 468 | WP_094960596.1 | DUF1456 family protein | - |
| G7Y73_RS11900 | 2594300..2594761 | + | 462 | WP_004254502.1 | DUF2384 domain-containing protein | Antitoxin |
| G7Y73_RS11905 | 2594758..2595216 | + | 459 | WP_164565295.1 | RES domain-containing protein | Toxin |
| G7Y73_RS11910 | 2595217..2596107 | - | 891 | WP_094960598.1 | LysR family transcriptional regulator | - |
| G7Y73_RS11915 | 2596153..2597112 | - | 960 | WP_164565296.1 | acetyl-CoA carboxylase carboxyl transferase subunit alpha | - |
| G7Y73_RS11920 | 2597218..2597640 | - | 423 | WP_004254515.1 | helix-turn-helix domain-containing protein | - |
| G7Y73_RS11925 | 2597671..2598234 | - | 564 | WP_004254518.1 | GNAT family N-acetyltransferase | - |
| G7Y73_RS11930 | 2598215..2599681 | - | 1467 | WP_036957754.1 | AMP nucleosidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 153 a.a. Molecular weight: 17159.73 Da Isoelectric Point: 6.4824
>T35498 WP_164565295.1 NZ_AP022373:2594758-2595216 [Providencia rettgeri]
MILYRLVKSNFAHDAWSGQGAMLYGGRWNHKGTPAVYTSTSISLATLEILVHINQDRLLSQFSLLSIDINDKYVMKLSLD
HLPTDWQQDPAPTSTMDIGTIWLNNQDSLVLLIPSCIVPYEYNAIINPLHPQFQKALHTVKPLDFSVDPRLA
MILYRLVKSNFAHDAWSGQGAMLYGGRWNHKGTPAVYTSTSISLATLEILVHINQDRLLSQFSLLSIDINDKYVMKLSLD
HLPTDWQQDPAPTSTMDIGTIWLNNQDSLVLLIPSCIVPYEYNAIINPLHPQFQKALHTVKPLDFSVDPRLA
Download Length: 459 bp
>T35498 NZ_AP022373:2594758-2595216 [Providencia rettgeri]
ATGATTTTATATCGATTGGTTAAATCCAATTTTGCGCATGATGCATGGTCGGGCCAAGGAGCTATGCTCTACGGCGGGCG
TTGGAATCATAAAGGGACTCCTGCTGTTTATACTTCAACGAGTATTTCATTAGCGACCCTTGAAATACTCGTTCACATCA
ATCAAGACAGACTATTGAGCCAGTTCAGCTTACTATCCATAGATATCAATGATAAGTACGTGATGAAATTGTCGTTAGAT
CACCTTCCGACAGATTGGCAACAAGACCCCGCACCAACCTCCACCATGGATATTGGCACTATATGGCTTAATAACCAAGA
TAGCCTAGTATTATTAATTCCCTCTTGTATTGTTCCCTATGAATACAACGCAATTATTAACCCGTTACATCCGCAATTTC
AAAAAGCTTTACATACCGTTAAACCACTAGATTTTAGTGTTGACCCGCGCTTAGCATAA
ATGATTTTATATCGATTGGTTAAATCCAATTTTGCGCATGATGCATGGTCGGGCCAAGGAGCTATGCTCTACGGCGGGCG
TTGGAATCATAAAGGGACTCCTGCTGTTTATACTTCAACGAGTATTTCATTAGCGACCCTTGAAATACTCGTTCACATCA
ATCAAGACAGACTATTGAGCCAGTTCAGCTTACTATCCATAGATATCAATGATAAGTACGTGATGAAATTGTCGTTAGAT
CACCTTCCGACAGATTGGCAACAAGACCCCGCACCAACCTCCACCATGGATATTGGCACTATATGGCTTAATAACCAAGA
TAGCCTAGTATTATTAATTCCCTCTTGTATTGTTCCCTATGAATACAACGCAATTATTAACCCGTTACATCCGCAATTTC
AAAAAGCTTTACATACCGTTAAACCACTAGATTTTAGTGTTGACCCGCGCTTAGCATAA
Antitoxin
Download Length: 154 a.a. Molecular weight: 17090.56 Da Isoelectric Point: 9.9140
>AT35498 WP_004254502.1 NZ_AP022373:2594300-2594761 [Providencia rettgeri]
MRNYIPTTPLQPTASSFKPLWRHVGLPAERGIELTHFLRQGLSVSVLDNIQEWSGMSKTELLRISGINERNIARRKNAGQ
PLNADESERIARLVRVFDAAVRLFNGDKHAASDWLNHPVKGLGHLRPIELIATESGAIEVIDLIGRIEHGVFS
MRNYIPTTPLQPTASSFKPLWRHVGLPAERGIELTHFLRQGLSVSVLDNIQEWSGMSKTELLRISGINERNIARRKNAGQ
PLNADESERIARLVRVFDAAVRLFNGDKHAASDWLNHPVKGLGHLRPIELIATESGAIEVIDLIGRIEHGVFS
Download Length: 462 bp
>AT35498 NZ_AP022373:2594300-2594761 [Providencia rettgeri]
ATGAGAAACTATATCCCCACAACCCCACTTCAACCGACTGCTTCATCCTTTAAACCACTGTGGCGCCATGTAGGGTTACC
CGCAGAACGTGGTATTGAGTTAACTCATTTCTTGCGTCAAGGCCTATCTGTCTCTGTCTTAGACAATATCCAAGAATGGT
CAGGAATGAGCAAAACTGAATTATTGCGAATATCCGGCATTAATGAGCGCAATATTGCTCGACGTAAAAATGCTGGCCAG
CCCCTTAATGCTGATGAAAGTGAGAGAATTGCTCGTCTAGTGCGGGTATTCGATGCTGCGGTGCGTTTATTTAATGGAGA
TAAGCACGCGGCAAGTGATTGGCTTAACCACCCAGTTAAAGGGTTAGGACATTTACGCCCTATTGAGCTTATTGCGACAG
AAAGCGGAGCCATTGAAGTGATTGATTTGATTGGCCGTATTGAACATGGCGTATTCTCATGA
ATGAGAAACTATATCCCCACAACCCCACTTCAACCGACTGCTTCATCCTTTAAACCACTGTGGCGCCATGTAGGGTTACC
CGCAGAACGTGGTATTGAGTTAACTCATTTCTTGCGTCAAGGCCTATCTGTCTCTGTCTTAGACAATATCCAAGAATGGT
CAGGAATGAGCAAAACTGAATTATTGCGAATATCCGGCATTAATGAGCGCAATATTGCTCGACGTAAAAATGCTGGCCAG
CCCCTTAATGCTGATGAAAGTGAGAGAATTGCTCGTCTAGTGCGGGTATTCGATGCTGCGGTGCGTTTATTTAATGGAGA
TAAGCACGCGGCAAGTGATTGGCTTAACCACCCAGTTAAAGGGTTAGGACATTTACGCCCTATTGAGCTTATTGCGACAG
AAAGCGGAGCCATTGAAGTGATTGATTTGATTGGCCGTATTGAACATGGCGTATTCTCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|