Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /RES-TIGR02293 |
| Location | 3667708..3668624 | Replicon | chromosome |
| Accession | NZ_AP022372 | ||
| Organism | Providencia rettgeri strain BML2526 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | pBML2531_RS16685 | Protein ID | WP_164455662.1 |
| Coordinates | 3668166..3668624 (+) | Length | 153 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | D4BTW8 |
| Locus tag | pBML2531_RS16680 | Protein ID | WP_004254502.1 |
| Coordinates | 3667708..3668169 (+) | Length | 154 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| pBML2531_RS16650 | 3663371..3663985 | + | 615 | WP_004254484.1 | LysE family translocator | - |
| pBML2531_RS16655 | 3664015..3664488 | - | 474 | WP_036957747.1 | NUDIX domain-containing protein | - |
| pBML2531_RS16660 | 3664840..3665481 | - | 642 | WP_004254492.1 | leucine efflux protein LeuE | - |
| pBML2531_RS16665 | 3665952..3666653 | + | 702 | WP_004254495.1 | AzlC family ABC transporter permease | - |
| pBML2531_RS16670 | 3666650..3666964 | + | 315 | WP_094960595.1 | AzlD domain-containing protein | - |
| pBML2531_RS16675 | 3667152..3667619 | + | 468 | WP_094960596.1 | DUF1456 family protein | - |
| pBML2531_RS16680 | 3667708..3668169 | + | 462 | WP_004254502.1 | DUF2384 domain-containing protein | Antitoxin |
| pBML2531_RS16685 | 3668166..3668624 | + | 459 | WP_164455662.1 | RES domain-containing protein | Toxin |
| pBML2531_RS16690 | 3668625..3669515 | - | 891 | WP_094960598.1 | LysR family transcriptional regulator | - |
| pBML2531_RS16695 | 3669561..3670520 | - | 960 | WP_164455664.1 | acetyl-CoA carboxylase carboxyl transferase subunit alpha | - |
| pBML2531_RS16700 | 3670626..3671048 | - | 423 | WP_094960600.1 | helix-turn-helix domain-containing protein | - |
| pBML2531_RS16705 | 3671079..3671642 | - | 564 | WP_004254518.1 | GNAT family N-acetyltransferase | - |
| pBML2531_RS16710 | 3671623..3673089 | - | 1467 | WP_036957754.1 | AMP nucleosidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 153 a.a. Molecular weight: 17158.71 Da Isoelectric Point: 6.4824
>T35493 WP_164455662.1 NZ_AP022372:3668166-3668624 [Providencia rettgeri]
MILYRLVKSNFAHDAWSGQGAMLYGGRWNHKGTPAVYTSTSISLATLEILVHINQDRLLNQFSLLSIDINDKYVMKLSLD
HLPTDWQQDPAPTSTMDIGTIWLNNQDSLALLIPSCIVPYEYNAIINPLHPQFQKALHTVKPLDFSVDPRLA
MILYRLVKSNFAHDAWSGQGAMLYGGRWNHKGTPAVYTSTSISLATLEILVHINQDRLLNQFSLLSIDINDKYVMKLSLD
HLPTDWQQDPAPTSTMDIGTIWLNNQDSLALLIPSCIVPYEYNAIINPLHPQFQKALHTVKPLDFSVDPRLA
Download Length: 459 bp
>T35493 NZ_AP022372:3668166-3668624 [Providencia rettgeri]
ATGATTTTATATCGATTGGTTAAATCCAATTTTGCGCATGATGCATGGTCGGGCCAAGGAGCTATGCTCTACGGCGGGCG
TTGGAATCATAAAGGGACTCCTGCTGTTTATACTTCAACAAGTATTTCATTAGCGACCCTTGAAATACTCGTTCACATCA
ATCAAGACAGACTATTGAACCAGTTCAGCTTACTATCCATAGATATCAATGATAAGTACGTGATGAAATTGTCGTTAGAT
CACCTTCCGACAGATTGGCAACAAGACCCCGCACCAACCTCCACCATGGATATTGGCACTATATGGCTTAATAACCAAGA
TAGTCTAGCATTATTAATTCCCTCTTGTATTGTTCCCTATGAATACAACGCAATTATTAACCCGTTACATCCGCAATTTC
AAAAAGCTTTACATACCGTTAAACCACTAGATTTTAGTGTTGACCCGCGCTTAGCATAA
ATGATTTTATATCGATTGGTTAAATCCAATTTTGCGCATGATGCATGGTCGGGCCAAGGAGCTATGCTCTACGGCGGGCG
TTGGAATCATAAAGGGACTCCTGCTGTTTATACTTCAACAAGTATTTCATTAGCGACCCTTGAAATACTCGTTCACATCA
ATCAAGACAGACTATTGAACCAGTTCAGCTTACTATCCATAGATATCAATGATAAGTACGTGATGAAATTGTCGTTAGAT
CACCTTCCGACAGATTGGCAACAAGACCCCGCACCAACCTCCACCATGGATATTGGCACTATATGGCTTAATAACCAAGA
TAGTCTAGCATTATTAATTCCCTCTTGTATTGTTCCCTATGAATACAACGCAATTATTAACCCGTTACATCCGCAATTTC
AAAAAGCTTTACATACCGTTAAACCACTAGATTTTAGTGTTGACCCGCGCTTAGCATAA
Antitoxin
Download Length: 154 a.a. Molecular weight: 17090.56 Da Isoelectric Point: 9.9140
>AT35493 WP_004254502.1 NZ_AP022372:3667708-3668169 [Providencia rettgeri]
MRNYIPTTPLQPTASSFKPLWRHVGLPAERGIELTHFLRQGLSVSVLDNIQEWSGMSKTELLRISGINERNIARRKNAGQ
PLNADESERIARLVRVFDAAVRLFNGDKHAASDWLNHPVKGLGHLRPIELIATESGAIEVIDLIGRIEHGVFS
MRNYIPTTPLQPTASSFKPLWRHVGLPAERGIELTHFLRQGLSVSVLDNIQEWSGMSKTELLRISGINERNIARRKNAGQ
PLNADESERIARLVRVFDAAVRLFNGDKHAASDWLNHPVKGLGHLRPIELIATESGAIEVIDLIGRIEHGVFS
Download Length: 462 bp
>AT35493 NZ_AP022372:3667708-3668169 [Providencia rettgeri]
ATGAGAAACTATATCCCCACAACCCCACTTCAACCGACTGCTTCATCCTTTAAACCACTGTGGCGCCATGTAGGGTTACC
CGCAGAACGTGGTATTGAGTTAACTCATTTCTTGCGTCAAGGCCTATCTGTCTCTGTCTTAGACAATATCCAAGAATGGT
CAGGAATGAGCAAAACTGAATTATTGCGAATATCCGGCATTAATGAGCGCAATATTGCTCGACGTAAAAATGCTGGCCAG
CCCCTTAATGCTGATGAAAGTGAGAGAATTGCTCGTCTAGTGCGGGTATTCGATGCTGCGGTGCGTTTATTTAATGGAGA
TAAGCACGCGGCAAGTGATTGGCTTAACCACCCAGTTAAAGGGTTAGGACATTTACGCCCTATTGAGCTTATTGCGACAG
AAAGCGGAGCCATTGAAGTGATTGATTTGATTGGCCGTATTGAACATGGCGTATTCTCATGA
ATGAGAAACTATATCCCCACAACCCCACTTCAACCGACTGCTTCATCCTTTAAACCACTGTGGCGCCATGTAGGGTTACC
CGCAGAACGTGGTATTGAGTTAACTCATTTCTTGCGTCAAGGCCTATCTGTCTCTGTCTTAGACAATATCCAAGAATGGT
CAGGAATGAGCAAAACTGAATTATTGCGAATATCCGGCATTAATGAGCGCAATATTGCTCGACGTAAAAATGCTGGCCAG
CCCCTTAATGCTGATGAAAGTGAGAGAATTGCTCGTCTAGTGCGGGTATTCGATGCTGCGGTGCGTTTATTTAATGGAGA
TAAGCACGCGGCAAGTGATTGGCTTAACCACCCAGTTAAAGGGTTAGGACATTTACGCCCTATTGAGCTTATTGCGACAG
AAAGCGGAGCCATTGAAGTGATTGATTTGATTGGCCGTATTGAACATGGCGTATTCTCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|