Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | PumAB/upstrm_HI1419-dnstrm_HI1420 |
Location | 1341000..1341601 | Replicon | chromosome |
Accession | NZ_AP022347 | ||
Organism | Fluviibacter phosphoraccumulans strain ICHIJ1 |
Toxin (Protein)
Gene name | PumA | Uniprot ID | - |
Locus tag | ICHIJ1_RS06750 | Protein ID | WP_162049885.1 |
Coordinates | 1341299..1341601 (-) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | PumB | Uniprot ID | - |
Locus tag | ICHIJ1_RS06745 | Protein ID | WP_162049884.1 |
Coordinates | 1341000..1341299 (-) | Length | 100 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
ICHIJ1_RS06740 | 1337843..1340980 | - | 3138 | WP_162049883.1 | N-6 DNA methylase | - |
ICHIJ1_RS06745 | 1341000..1341299 | - | 300 | WP_162049884.1 | putative addiction module antidote protein | Antitoxin |
ICHIJ1_RS06750 | 1341299..1341601 | - | 303 | WP_162049885.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
ICHIJ1_RS06760 | 1341934..1343340 | + | 1407 | WP_162049886.1 | glutamate--tRNA ligase | - |
ICHIJ1_RS06780 | 1343924..1345387 | + | 1464 | WP_162049887.1 | transglycosylase SLT domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11535.29 Da Isoelectric Point: 8.9004
>T35402 WP_162049885.1 NZ_AP022347:c1341601-1341299 [Fluviibacter phosphoraccumulans]
MKIIYTTKIFDSWYQKLKDREAARFIQVRIDRAEDGNFGDCKPIGEGVSEMRLHVGPGYRLYFMQQGLEIVILLAGGNKS
SQSRDIEIALQIAREIRENK
MKIIYTTKIFDSWYQKLKDREAARFIQVRIDRAEDGNFGDCKPIGEGVSEMRLHVGPGYRLYFMQQGLEIVILLAGGNKS
SQSRDIEIALQIAREIRENK
Download Length: 303 bp
>T35402 NZ_AP022347:c1341601-1341299 [Fluviibacter phosphoraccumulans]
ATGAAAATCATTTATACAACGAAGATCTTTGATTCTTGGTATCAAAAGCTCAAAGATCGGGAAGCGGCTCGGTTCATTCA
GGTGCGAATTGATCGCGCAGAAGATGGCAACTTTGGTGATTGCAAGCCCATTGGTGAAGGCGTATCTGAAATGCGTTTGC
ATGTAGGGCCAGGCTACCGTCTGTATTTTATGCAACAAGGTTTAGAGATTGTGATTTTGCTGGCAGGCGGAAACAAATCG
TCACAGAGCCGAGATATAGAGATTGCTTTGCAAATTGCAAGAGAGATTAGGGAGAACAAGTGA
ATGAAAATCATTTATACAACGAAGATCTTTGATTCTTGGTATCAAAAGCTCAAAGATCGGGAAGCGGCTCGGTTCATTCA
GGTGCGAATTGATCGCGCAGAAGATGGCAACTTTGGTGATTGCAAGCCCATTGGTGAAGGCGTATCTGAAATGCGTTTGC
ATGTAGGGCCAGGCTACCGTCTGTATTTTATGCAACAAGGTTTAGAGATTGTGATTTTGCTGGCAGGCGGAAACAAATCG
TCACAGAGCCGAGATATAGAGATTGCTTTGCAAATTGCAAGAGAGATTAGGGAGAACAAGTGA
Antitoxin
Download Length: 100 a.a. Molecular weight: 10681.28 Da Isoelectric Point: 6.7170
>AT35402 WP_162049884.1 NZ_AP022347:c1341299-1341000 [Fluviibacter phosphoraccumulans]
MKTIQLRRWDSAEHLKTPEDMALYLEACLQEAGDDAAFVAKALGNIARAKGMSQLANETGMGRESLYKALSGEGNPSFAT
ILKVTRALGIELHALPAHV
MKTIQLRRWDSAEHLKTPEDMALYLEACLQEAGDDAAFVAKALGNIARAKGMSQLANETGMGRESLYKALSGEGNPSFAT
ILKVTRALGIELHALPAHV
Download Length: 300 bp
>AT35402 NZ_AP022347:c1341299-1341000 [Fluviibacter phosphoraccumulans]
ATGAAAACCATTCAGTTACGTCGCTGGGATAGTGCCGAACACCTTAAAACGCCGGAGGATATGGCGTTATATCTCGAGGC
TTGTCTCCAAGAAGCGGGAGACGACGCAGCATTTGTAGCCAAAGCACTAGGTAATATCGCACGCGCCAAAGGCATGTCGC
AGCTTGCTAATGAAACAGGTATGGGGCGTGAAAGTCTTTATAAAGCGCTATCGGGTGAAGGTAACCCAAGTTTTGCCACG
ATCCTTAAGGTTACCCGTGCGCTCGGCATTGAGCTGCATGCTCTGCCAGCTCACGTCTAA
ATGAAAACCATTCAGTTACGTCGCTGGGATAGTGCCGAACACCTTAAAACGCCGGAGGATATGGCGTTATATCTCGAGGC
TTGTCTCCAAGAAGCGGGAGACGACGCAGCATTTGTAGCCAAAGCACTAGGTAATATCGCACGCGCCAAAGGCATGTCGC
AGCTTGCTAATGAAACAGGTATGGGGCGTGAAAGTCTTTATAAAGCGCTATCGGGTGAAGGTAACCCAAGTTTTGCCACG
ATCCTTAAGGTTACCCGTGCGCTCGGCATTGAGCTGCATGCTCTGCCAGCTCACGTCTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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