Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-pasA/HTH(antitoxin)
Location 384403..385049 Replicon chromosome
Accession NZ_AP022347
Organism Fluviibacter phosphoraccumulans strain ICHIJ1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag ICHIJ1_RS02005 Protein ID WP_162049064.1
Coordinates 384403..384681 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag ICHIJ1_RS02010 Protein ID WP_162049065.1
Coordinates 384822..385049 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ICHIJ1_RS01980 379637..380986 + 1350 WP_162049059.1 undecaprenyl-phosphate glucose phosphotransferase -
ICHIJ1_RS01985 380976..382397 + 1422 WP_202930720.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
ICHIJ1_RS01990 382406..383263 + 858 WP_162049061.1 hypothetical protein -
ICHIJ1_RS01995 383305..384054 - 750 WP_162049062.1 YdcF family protein -
ICHIJ1_RS02000 384149..384406 + 258 WP_162049063.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
ICHIJ1_RS02005 384403..384681 + 279 WP_162049064.1 plasmid stabilization protein Toxin
ICHIJ1_RS02010 384822..385049 + 228 WP_162049065.1 ribbon-helix-helix protein, CopG family Antitoxin
ICHIJ1_RS02015 385033..385308 + 276 WP_162049066.1 type II toxin-antitoxin system RelE/ParE family toxin -
ICHIJ1_RS02020 385325..385813 - 489 WP_162049067.1 hypothetical protein -
ICHIJ1_RS02025 385947..386693 + 747 WP_162049068.1 autoinducer binding domain-containing protein -
ICHIJ1_RS02030 386662..386922 - 261 WP_202930798.1 helix-turn-helix domain-containing protein -
ICHIJ1_RS02035 387116..388264 + 1149 WP_162049069.1 Fic family protein -
ICHIJ1_RS02040 388319..389701 - 1383 WP_162049070.1 Fic family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Ribbon-helix-helix protein, CopG

(3-35)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10532.33 Da        Isoelectric Point: 8.2894

>T35395 WP_162049064.1 NZ_AP022347:384403-384681 [Fluviibacter phosphoraccumulans]
MSYCLVFTESYTKRAAKWLKCHPDLRQQYLKTLQLLELNPFHPSLRLHALSGRLQGIHAVSINLTCRITLALLVTDEEIV
LINVGDHDGVYK

Download         Length: 279 bp

>T35395 NZ_AP022347:384403-384681 [Fluviibacter phosphoraccumulans]
ATGAGCTATTGCCTGGTTTTTACTGAGTCTTACACCAAACGCGCCGCTAAGTGGCTCAAATGCCATCCGGACTTGCGTCA
GCAGTATCTGAAAACCTTGCAACTACTAGAACTTAACCCGTTTCATCCGTCCCTCCGTTTACATGCGCTATCAGGTCGAT
TGCAAGGCATCCATGCTGTGTCGATCAACCTGACGTGTCGGATAACGCTAGCGCTGCTGGTGACGGACGAAGAGATCGTG
CTGATTAACGTGGGTGATCATGATGGGGTTTATAAATGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8464.55 Da        Isoelectric Point: 4.5084

>AT35395 WP_162049065.1 NZ_AP022347:384822-385049 [Fluviibacter phosphoraccumulans]
MAVSLRLDPEIEQRLDHLAAQTGRAKSYYLRELIEGGLDDLEGFYLADATMERVRKGEESVLDAAEVRKSIAMDH

Download         Length: 228 bp

>AT35395 NZ_AP022347:384822-385049 [Fluviibacter phosphoraccumulans]
ATGGCGGTGTCGCTCAGGCTGGACCCTGAAATTGAACAACGGCTCGATCATTTGGCGGCCCAGACCGGGCGTGCCAAGTC
TTACTATTTACGCGAGCTGATCGAGGGTGGCCTCGATGATCTAGAAGGTTTTTACCTGGCGGATGCCACGATGGAGCGTG
TTCGCAAAGGTGAGGAGTCTGTGCTGGATGCGGCTGAAGTAAGGAAGTCGATTGCCATGGATCATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References