Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2019029..2019195 | Replicon | chromosome |
| Accession | NZ_AP022268 | ||
| Organism | Raoultella ornithinolytica strain WP8-W19-CRE-01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2019087..2019190 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2019029..2019195 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R88_RS09395 | 2014167..2016227 | + | 2061 | WP_044350916.1 | oligopeptidase B | - |
| H7R88_RS09400 | 2016233..2016892 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| H7R88_RS09405 | 2016971..2017201 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| H7R88_RS09410 | 2017328..2017702 | + | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| H7R88_RS09415 | 2017706..2018575 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| H7R88_RS09420 | 2018592..2018930 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 2019029..2019195 | - | 167 | - | - | Antitoxin |
| - | 2019087..2019190 | + | 104 | - | - | Toxin |
| H7R88_RS09425 | 2019500..2019643 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| H7R88_RS09430 | 2019764..2020735 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| H7R88_RS09435 | 2020878..2021522 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| H7R88_RS09440 | 2021528..2021719 | - | 192 | WP_004863962.1 | YebW family protein | - |
| H7R88_RS09445 | 2021813..2022052 | - | 240 | WP_004863958.1 | YebV family protein | - |
| H7R88_RS09450 | 2022167..2023600 | - | 1434 | WP_072046549.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35147 NZ_AP022268:2019087-2019190 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT35147 NZ_AP022268:c2019195-2019029 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
