Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2167881..2168152 | Replicon | chromosome |
| Accession | NZ_AP022222 | ||
| Organism | Escherichia coli strain WP8-S17-ESBL-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2168011..2168114 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2167881..2168152 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R20_RS10210 | 2164436..2165098 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H7R20_RS10215 | 2165122..2165778 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| H7R20_RS10220 | 2165880..2166110 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R20_RS10225 | 2166249..2166623 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| H7R20_RS10230 | 2166627..2167499 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| H7R20_RS10235 | 2167512..2167853 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2167881..2168152 | - | 272 | - | - | Antitoxin |
| - | 2168011..2168114 | + | 104 | - | - | Toxin |
| H7R20_RS10240 | 2168249..2168905 | + | 657 | WP_001546849.1 | protein-serine/threonine phosphatase | - |
| H7R20_RS10245 | 2168906..2169097 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7R20_RS10250 | 2169202..2169438 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R20_RS10255 | 2169556..2170995 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2144094..2184702 | 40608 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35021 NZ_AP022222:2168011-2168114 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT35021 NZ_AP022222:c2168152-2167881 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
