Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1972593..1972864 | Replicon | chromosome |
| Accession | NZ_AP022215 | ||
| Organism | Escherichia coli strain WP8-S17-ESBL-05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1972723..1972826 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1972593..1972864 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R13_RS09310 | 1969148..1969810 | - | 663 | WP_182913684.1 | exodeoxyribonuclease X | - |
| H7R13_RS09315 | 1969834..1970490 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H7R13_RS09320 | 1970592..1970822 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R13_RS09325 | 1970961..1971335 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H7R13_RS09330 | 1971339..1972211 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H7R13_RS09335 | 1972224..1972565 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1972593..1972864 | - | 272 | - | - | Antitoxin |
| - | 1972723..1972826 | + | 104 | - | - | Toxin |
| H7R13_RS09340 | 1972961..1973617 | + | 657 | WP_000812710.1 | protein-serine/threonine phosphatase | - |
| H7R13_RS09345 | 1973618..1973809 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7R13_RS09350 | 1973914..1974150 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R13_RS09355 | 1974268..1975707 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T34960 NZ_AP022215:1972723-1972826 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT34960 NZ_AP022215:c1972864-1972593 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
