Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2257844..2258115 | Replicon | chromosome |
| Accession | NZ_AP022207 | ||
| Organism | Escherichia coli strain WP7-S18-ESBL-09 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2257974..2258077 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2257844..2258115 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R37_RS10750 | 2254399..2255061 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H7R37_RS10755 | 2255085..2255741 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| H7R37_RS10760 | 2255843..2256073 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R37_RS10765 | 2256212..2256586 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| H7R37_RS10770 | 2256590..2257462 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| H7R37_RS10775 | 2257475..2257816 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 2257844..2258115 | - | 272 | - | - | Antitoxin |
| - | 2257974..2258077 | + | 104 | - | - | Toxin |
| H7R37_RS10780 | 2258212..2258868 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| H7R37_RS10785 | 2258869..2259060 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7R37_RS10790 | 2259165..2259401 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R37_RS10795 | 2259519..2260958 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T34915 NZ_AP022207:2257974-2258077 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT34915 NZ_AP022207:c2258115-2257844 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
