Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2271883..2272154 | Replicon | chromosome |
| Accession | NZ_AP022173 | ||
| Organism | Escherichia coli strain WP7-S17-ESBL-01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2272013..2272116 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2271883..2272154 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R26_RS10930 | 2268438..2269100 | - | 663 | WP_016239019.1 | exodeoxyribonuclease X | - |
| H7R26_RS10935 | 2269124..2269780 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| H7R26_RS10940 | 2269882..2270112 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R26_RS10945 | 2270251..2270625 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| H7R26_RS10950 | 2270629..2271501 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| H7R26_RS10955 | 2271514..2271855 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2271883..2272154 | - | 272 | - | - | Antitoxin |
| - | 2272013..2272116 | + | 104 | - | - | Toxin |
| H7R26_RS10960 | 2272251..2272907 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| H7R26_RS10965 | 2272908..2273099 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7R26_RS10970 | 2273204..2273440 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R26_RS10975 | 2273558..2274997 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2262710..2287993 | 25283 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T34831 NZ_AP022173:2272013-2272116 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT34831 NZ_AP022173:c2272154-2271883 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
