Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3014339..3014493 | Replicon | chromosome |
| Accession | NZ_AP022126 | ||
| Organism | Enterobacter cloacae strain WP5-S18-CRE-02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3014355..3014458 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3014339..3014493 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R61_RS14585 | 3010615..3012057 | + | 1443 | WP_032645266.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H7R61_RS14590 | 3012164..3012403 | + | 240 | WP_008500472.1 | YebV family protein | - |
| H7R61_RS14595 | 3012438..3013082 | - | 645 | WP_014884297.1 | protein-serine/threonine phosphatase | - |
| H7R61_RS14600 | 3013250..3014191 | + | 942 | WP_014884298.1 | VirK/YbjX family protein | - |
| - | 3014339..3014493 | + | 155 | - | - | Antitoxin |
| - | 3014355..3014458 | - | 104 | - | - | Toxin |
| H7R61_RS14605 | 3014597..3014935 | - | 339 | WP_014884299.1 | YebY family protein | - |
| H7R61_RS14610 | 3014952..3015821 | - | 870 | WP_014884300.1 | copper homeostasis membrane protein CopD | - |
| H7R61_RS14615 | 3015823..3016194 | - | 372 | WP_014884301.1 | CopC domain-containing protein YobA | - |
| H7R61_RS14620 | 3016332..3016562 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| H7R61_RS14625 | 3016673..3017323 | + | 651 | WP_014884302.1 | carbon-nitrogen hydrolase family protein | - |
| H7R61_RS14630 | 3017348..3018010 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T34660 NZ_AP022126:c3014458-3014355 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT34660 NZ_AP022126:3014339-3014493 [Enterobacter cloacae]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
