Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2281577..2281724 | Replicon | chromosome |
| Accession | NZ_AP022112 | ||
| Organism | Klebsiella quasipneumoniae strain WP5-W18-ESBL-06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2281581..2281683 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2281577..2281724 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R83_RS11205 | 2277093..2278526 | + | 1434 | WP_053810194.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H7R83_RS11210 | 2278643..2278882 | + | 240 | WP_182937354.1 | YebV family protein | - |
| H7R83_RS11215 | 2278980..2279171 | + | 192 | WP_002911395.1 | YebW family protein | - |
| H7R83_RS11220 | 2279168..2279821 | - | 654 | WP_062914107.1 | protein-serine/threonine phosphatase | - |
| H7R83_RS11225 | 2279978..2280946 | + | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| H7R83_RS11230 | 2281050..2281193 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 2281577..2281724 | + | 148 | - | - | Antitoxin |
| - | 2281581..2281683 | - | 103 | - | - | Toxin |
| H7R83_RS11235 | 2281842..2282180 | - | 339 | WP_002911404.1 | YebY family protein | - |
| H7R83_RS11240 | 2282197..2283066 | - | 870 | WP_064183814.1 | copper homeostasis membrane protein CopD | - |
| H7R83_RS11245 | 2283070..2283444 | - | 375 | WP_135698781.1 | CopC domain-containing protein YobA | - |
| H7R83_RS11250 | 2283557..2283787 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H7R83_RS11255 | 2283866..2284525 | + | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| H7R83_RS11260 | 2284529..2286589 | - | 2061 | WP_032456310.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T34600 NZ_AP022112:c2281683-2281581 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT34600 NZ_AP022112:2281577-2281724 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
