Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2202302..2202573 | Replicon | chromosome |
| Accession | NZ_AP022098 | ||
| Organism | Escherichia coli strain WP4-S18-ESBL-09 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2202432..2202535 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2202302..2202573 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R19_RS10225 | 2198857..2199519 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H7R19_RS10230 | 2199543..2200199 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| H7R19_RS10235 | 2200301..2200531 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R19_RS10240 | 2200670..2201044 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| H7R19_RS10245 | 2201048..2201920 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| H7R19_RS10250 | 2201933..2202274 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2202302..2202573 | - | 272 | - | - | Antitoxin |
| - | 2202432..2202535 | + | 104 | - | - | Toxin |
| H7R19_RS10255 | 2202670..2203326 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| H7R19_RS10260 | 2203327..2203518 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7R19_RS10265 | 2203623..2203859 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R19_RS10270 | 2203977..2205416 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T34497 NZ_AP022098:2202432-2202535 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT34497 NZ_AP022098:c2202573-2202302 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
