Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2135044..2135315 | Replicon | chromosome |
| Accession | NZ_AP022095 | ||
| Organism | Escherichia coli strain WP4-S18-ESBL-08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2135174..2135277 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2135044..2135315 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R08_RS10200 | 2131600..2132262 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H7R08_RS10205 | 2132286..2132942 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| H7R08_RS10210 | 2133044..2133274 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R08_RS10215 | 2133413..2133787 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H7R08_RS10220 | 2133791..2134663 | + | 873 | WP_108429901.1 | copper homeostasis membrane protein CopD | - |
| H7R08_RS10225 | 2134676..2135017 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2135044..2135315 | - | 272 | - | - | Antitoxin |
| - | 2135174..2135277 | + | 104 | - | - | Toxin |
| H7R08_RS10230 | 2135412..2136068 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H7R08_RS10235 | 2136069..2136260 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7R08_RS10240 | 2136365..2136601 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R08_RS10245 | 2136719..2138158 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T34462 NZ_AP022095:2135174-2135277 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT34462 NZ_AP022095:c2135315-2135044 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
