Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2174912..2175183 | Replicon | chromosome |
| Accession | NZ_AP022069 | ||
| Organism | Escherichia coli strain WP4-W18-ESBL-09 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2175042..2175145 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2174912..2175183 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R28_RS10155 | 2171467..2172129 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H7R28_RS10160 | 2172153..2172809 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| H7R28_RS10165 | 2172911..2173141 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R28_RS10170 | 2173280..2173654 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| H7R28_RS10175 | 2173658..2174530 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| H7R28_RS10180 | 2174543..2174884 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 2174912..2175183 | - | 272 | - | - | Antitoxin |
| - | 2175042..2175145 | + | 104 | - | - | Toxin |
| H7R28_RS10185 | 2175280..2175936 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| H7R28_RS10190 | 2175937..2176128 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7R28_RS10195 | 2176233..2176469 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R28_RS10200 | 2176587..2178026 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T34359 NZ_AP022069:2175042-2175145 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT34359 NZ_AP022069:c2175183-2174912 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
