Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2671446..2671714 | Replicon | chromosome |
| Accession | NZ_AP022064 | ||
| Organism | Escherichia coli strain WP4-W18-ESBL-08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2671484..2671586 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2671446..2671714 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R03_RS13135 | 2668604..2670043 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H7R03_RS13140 | 2670160..2670396 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R03_RS13145 | 2670501..2670692 | + | 192 | WP_001296140.1 | YebW family protein | - |
| H7R03_RS13150 | 2670693..2671349 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 2671446..2671714 | + | 269 | - | - | Antitoxin |
| - | 2671484..2671586 | - | 103 | - | - | Toxin |
| H7R03_RS13155 | 2671744..2672085 | - | 342 | WP_000976472.1 | YebY family protein | - |
| H7R03_RS13160 | 2672098..2672970 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| H7R03_RS13165 | 2672974..2673348 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H7R03_RS13170 | 2673487..2673717 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R03_RS13175 | 2673819..2674475 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| H7R03_RS13180 | 2674499..2675161 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2654831..2677218 | 22387 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T34320 NZ_AP022064:c2671586-2671484 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT34320 NZ_AP022064:2671446-2671714 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
