Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2183596..2183864 | Replicon | chromosome |
| Accession | NZ_AP022044 | ||
| Organism | Escherichia coli strain WP4-S17-ESBL-03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2183724..2183826 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2183596..2183864 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R12_RS10440 | 2180149..2180811 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H7R12_RS10445 | 2180835..2181491 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| H7R12_RS10450 | 2181593..2181823 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R12_RS10455 | 2181962..2182336 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H7R12_RS10460 | 2182340..2183212 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| H7R12_RS10465 | 2183225..2183566 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2183596..2183864 | - | 269 | - | - | Antitoxin |
| - | 2183724..2183826 | + | 103 | - | - | Toxin |
| H7R12_RS10470 | 2183961..2184617 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| H7R12_RS10475 | 2184618..2184809 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7R12_RS10480 | 2184916..2185152 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R12_RS10485 | 2185269..2186708 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T34236 NZ_AP022044:2183724-2183826 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT34236 NZ_AP022044:c2183864-2183596 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
