Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2094994..2095262 | Replicon | chromosome |
| Accession | NZ_AP022032 | ||
| Organism | Escherichia coli strain WP3-S18-ESBL-08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2095122..2095224 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2094994..2095262 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R15_RS09895 | 2091547..2092209 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H7R15_RS09900 | 2092233..2092889 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| H7R15_RS09905 | 2092991..2093221 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R15_RS09910 | 2093360..2093734 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H7R15_RS09915 | 2093738..2094610 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| H7R15_RS09920 | 2094623..2094964 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2094994..2095262 | - | 269 | - | - | Antitoxin |
| - | 2095122..2095224 | + | 103 | - | - | Toxin |
| H7R15_RS09925 | 2095359..2096015 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| H7R15_RS09930 | 2096016..2096207 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7R15_RS09935 | 2096312..2096548 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R15_RS09940 | 2096665..2098104 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T34171 NZ_AP022032:2095122-2095224 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT34171 NZ_AP022032:c2095262-2094994 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
