Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1937253..1937524 | Replicon | chromosome |
| Accession | NZ_AP022030 | ||
| Organism | Escherichia coli strain WP3-S18-ESBL-07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1937383..1937486 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1937253..1937524 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R16_RS09280 | 1933808..1934470 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H7R16_RS09285 | 1934494..1935150 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H7R16_RS09290 | 1935252..1935482 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R16_RS09295 | 1935621..1935995 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H7R16_RS09300 | 1935999..1936871 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| H7R16_RS09305 | 1936884..1937225 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1937253..1937524 | - | 272 | - | - | Antitoxin |
| - | 1937383..1937486 | + | 104 | - | - | Toxin |
| H7R16_RS09310 | 1937621..1938277 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H7R16_RS09315 | 1938278..1938469 | - | 192 | WP_000457842.1 | YebW family protein | - |
| H7R16_RS09320 | 1938574..1938810 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R16_RS09325 | 1938928..1940367 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T34145 NZ_AP022030:1937383-1937486 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT34145 NZ_AP022030:c1937524-1937253 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
