Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1970575..1970722 | Replicon | chromosome |
| Accession | NZ_AP022014 | ||
| Organism | Klebsiella quasipneumoniae strain WP3-S18-ESBL-03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1970616..1970718 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1970575..1970722 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R87_RS09525 | 1965710..1967770 | + | 2061 | WP_182971857.1 | oligopeptidase B | - |
| H7R87_RS09530 | 1967774..1968433 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| H7R87_RS09535 | 1968512..1968742 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H7R87_RS09540 | 1968855..1969229 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| H7R87_RS09545 | 1969233..1970102 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| H7R87_RS09550 | 1970119..1970457 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1970575..1970722 | - | 148 | - | - | Antitoxin |
| - | 1970616..1970718 | + | 103 | - | - | Toxin |
| H7R87_RS09555 | 1971106..1971249 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| H7R87_RS09560 | 1971353..1972321 | - | 969 | WP_182971858.1 | VirK/YbjX family protein | - |
| H7R87_RS09565 | 1972478..1973131 | + | 654 | WP_182971859.1 | protein-serine/threonine phosphatase | - |
| H7R87_RS09570 | 1973128..1973319 | - | 192 | WP_002911395.1 | YebW family protein | - |
| H7R87_RS09575 | 1973417..1973656 | - | 240 | WP_002911393.1 | YebV family protein | - |
| H7R87_RS09580 | 1973773..1975206 | - | 1434 | WP_182971860.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T34121 NZ_AP022014:1970616-1970718 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT34121 NZ_AP022014:c1970722-1970575 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
