Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1964179..1964326 | Replicon | chromosome |
| Accession | NZ_AP022005 | ||
| Organism | Klebsiella quasipneumoniae strain WP3-S18-CRE-02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1964220..1964322 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1964179..1964326 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R71_RS09605 | 1959315..1961375 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| H7R71_RS09610 | 1961379..1962038 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| H7R71_RS09615 | 1962117..1962347 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H7R71_RS09620 | 1962460..1962834 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| H7R71_RS09625 | 1962838..1963707 | + | 870 | WP_182949101.1 | copper homeostasis membrane protein CopD | - |
| H7R71_RS09630 | 1963724..1964062 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1964179..1964326 | - | 148 | - | - | Antitoxin |
| - | 1964220..1964322 | + | 103 | - | - | Toxin |
| H7R71_RS09635 | 1964701..1964844 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| H7R71_RS09640 | 1964945..1965913 | - | 969 | WP_142737047.1 | VirK/YbjX family protein | - |
| H7R71_RS09645 | 1966070..1966723 | + | 654 | WP_023318613.1 | protein-serine/threonine phosphatase | - |
| H7R71_RS09650 | 1966720..1966911 | - | 192 | WP_002911395.1 | YebW family protein | - |
| H7R71_RS09655 | 1967009..1967248 | - | 240 | WP_002911393.1 | YebV family protein | - |
| H7R71_RS09660 | 1967364..1968797 | - | 1434 | WP_065696926.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T34100 NZ_AP022005:1964220-1964322 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT34100 NZ_AP022005:c1964326-1964179 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
