Detailed information of TA system TA034083

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): shpAB/BrnT-BrnA
• Location: 4382418..4382926
• Replicon: chromosome
• Accession: NZ_AP022003
• Organism: Escherichia coli strain WP3-W18-ESBL-08

Toxin (Protein)

• Gene name: shpA
• Uniprot ID: -
• Locus tag: H7R22_RS21080
• Protein ID: WP_001534843.1
• Coordinates: 4382717..4382926 (-)
• Length: 70 a.a.

Antitoxin (Protein)

• Gene name: shpB
• Uniprot ID: A0A0V9L4L3
• Locus tag: H7R22_RS21075
• Protein ID: WP_000063161.1
• Coordinates: 4382418..4382720 (-)
• Length: 101 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
H7R22_RS21060	4378946..4381096	+	2151	WP_001366791.1	pyruvate/proton symporter BtsT	-
H7R22_RS21065	4381214..4381417	+	204	WP_001534846.1	YbdD/YjiX family protein	-
H7R22_RS21070	4381428..4382384	+	957	WP_001534845.1	GTPase	-
H7R22_RS21075	4382418..4382720	-	303	WP_000063161.1	BrnA antitoxin family protein	Antitoxin
H7R22_RS21080	4382717..4382926	-	210	WP_001534843.1	BrnT family toxin	Toxin
H7R22_RS21085	4383022..4384188	+	1167	WP_001534841.1	restriction endonuclease	-
H7R22_RS21090	4384252..4385871	+	1620	WP_001550561.1	type I restriction-modification system subunit M	-
H7R22_RS21095	4385861..4387171	+	1311	WP_001534837.1	restriction endonuclease subunit S	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• BrnA antitoxin of type II toxin-antitoxin system (37-93)

Sequences

Toxin

Protein

• Length: 70 a.a.
• Molecular weight: 7952.17 Da
• Isoelectric Point: 4.9493

>T34083 WP_001534843.1 NZ_AP022003:c4382926-4382717 [Escherichia coli]
MVDYPKRDAISNINAIIVDTFLYIQLGMATMPMEFEWNANKAKSNRVKHGIRFEDAVLVLDDPQRTEPL

Nucleotide

• Length: 210 bp

>T34083 NZ_AP022003:c4382926-4382717 [Escherichia coli]
ATGGTTGATTATCCAAAACGTGATGCTATTTCCAACATCAACGCTATAATTGTAGATACATTTTTGTATATACAATTAGG
GATGGCAACTATGCCAATGGAGTTTGAATGGAATGCAAACAAGGCCAAAAGTAATCGGGTGAAACATGGCATCCGCTTTG
AAGATGCGGTGTTAGTGCTTGATGATCCACAACGAACGGAGCCGCTATGA

Antitoxin

Protein

• Length: 101 a.a.
• Molecular weight: 11600.10 Da
• Isoelectric Point: 9.4646

>AT34083 WP_000063161.1 NZ_AP022003:c4382720-4382418 [Escherichia coli]
MSMVKHKRGTSSTLDVQHEAELKVLANKFDEDIDYSDIPSSSDEQWSNAERGKFYRPLKTQASVRIDADVMEWLKRPGKG
YQTRLNAILREAMLRDQNKK

Nucleotide

• Length: 303 bp

>AT34083 NZ_AP022003:c4382720-4382418 [Escherichia coli]
ATGAGCATGGTTAAACATAAACGAGGGACCTCCTCTACACTCGATGTGCAGCATGAGGCCGAACTGAAGGTGCTGGCGAA
CAAATTCGACGAGGATATTGATTACAGCGACATCCCATCTTCCAGCGATGAGCAATGGTCTAACGCAGAACGCGGTAAGT
TTTATCGGCCATTGAAAACTCAGGCTTCGGTGCGTATTGATGCTGATGTGATGGAATGGTTGAAGCGACCAGGTAAAGGC
TATCAAACTCGCCTGAACGCAATTTTACGTGAAGCGATGCTGCGCGATCAGAACAAAAAATAA

Structures

Antitoxin

• AlphaFold DB: A0A0V9L4L3