Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2184735..2185006 | Replicon | chromosome |
| Accession | NZ_AP022003 | ||
| Organism | Escherichia coli strain WP3-W18-ESBL-08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2184865..2184968 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2184735..2185006 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R22_RS10395 | 2181290..2181952 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H7R22_RS10400 | 2181976..2182632 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| H7R22_RS10405 | 2182734..2182964 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R22_RS10410 | 2183103..2183477 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H7R22_RS10415 | 2183481..2184353 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| H7R22_RS10420 | 2184366..2184707 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2184735..2185006 | - | 272 | - | - | Antitoxin |
| - | 2184865..2184968 | + | 104 | - | - | Toxin |
| H7R22_RS10425 | 2185103..2185759 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| H7R22_RS10430 | 2185760..2185951 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7R22_RS10435 | 2186056..2186292 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R22_RS10440 | 2186410..2187849 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2177425..2200846 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T34068 NZ_AP022003:2184865-2184968 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT34068 NZ_AP022003:c2185006-2184735 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
