Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2162291..2162559 | Replicon | chromosome |
| Accession | NZ_AP021998 | ||
| Organism | Escherichia coli strain WP3-W18-ESBL-07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2162419..2162521 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2162291..2162559 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7Q99_RS10240 | 2158844..2159506 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H7Q99_RS10245 | 2159530..2160186 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| H7Q99_RS10250 | 2160288..2160518 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7Q99_RS10255 | 2160657..2161031 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H7Q99_RS10260 | 2161035..2161907 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| H7Q99_RS10265 | 2161920..2162261 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2162291..2162559 | - | 269 | - | - | Antitoxin |
| - | 2162419..2162521 | + | 103 | - | - | Toxin |
| H7Q99_RS10270 | 2162656..2163312 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| H7Q99_RS10275 | 2163313..2163504 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H7Q99_RS10280 | 2163609..2163845 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7Q99_RS10285 | 2163962..2165401 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T34034 NZ_AP021998:2162419-2162521 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT34034 NZ_AP021998:c2162559-2162291 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
