Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2109836..2110002 | Replicon | chromosome |
| Accession | NZ_AP021983 | ||
| Organism | Raoultella ornithinolytica strain WP3-W18-ESBL-06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2109894..2109997 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2109836..2110002 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R89_RS10005 | 2104974..2107034 | + | 2061 | WP_182952373.1 | oligopeptidase B | - |
| H7R89_RS10010 | 2107040..2107699 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| H7R89_RS10015 | 2107778..2108008 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| H7R89_RS10020 | 2108135..2108509 | + | 375 | WP_123629599.1 | CopC domain-containing protein YobA | - |
| H7R89_RS10025 | 2108513..2109382 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| H7R89_RS10030 | 2109399..2109737 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 2109836..2110002 | - | 167 | - | - | Antitoxin |
| - | 2109894..2109997 | + | 104 | - | - | Toxin |
| H7R89_RS10035 | 2110307..2110450 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| H7R89_RS10040 | 2110571..2111542 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| H7R89_RS10045 | 2111685..2112329 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| H7R89_RS10050 | 2112335..2112526 | - | 192 | WP_004863962.1 | YebW family protein | - |
| H7R89_RS10055 | 2112620..2112859 | - | 240 | WP_004863958.1 | YebV family protein | - |
| H7R89_RS10060 | 2112974..2114407 | - | 1434 | WP_182952374.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T34006 NZ_AP021983:2109894-2109997 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT34006 NZ_AP021983:c2110002-2109836 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
