Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2195759..2196027 | Replicon | chromosome |
| Accession | NZ_AP021963 | ||
| Organism | Escherichia coli strain WP3-W18-CRE-03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2195887..2195989 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2195759..2196027 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R02_RS10375 | 2192312..2192974 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| H7R02_RS10380 | 2192998..2193654 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| H7R02_RS10385 | 2193756..2193986 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R02_RS10390 | 2194125..2194499 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H7R02_RS10395 | 2194503..2195375 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| H7R02_RS10400 | 2195388..2195729 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2195759..2196027 | - | 269 | - | - | Antitoxin |
| - | 2195887..2195989 | + | 103 | - | - | Toxin |
| H7R02_RS10405 | 2196124..2196780 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| H7R02_RS10410 | 2196781..2196972 | - | 192 | WP_024186842.1 | YebW family protein | - |
| H7R02_RS10415 | 2197077..2197313 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R02_RS10420 | 2197432..2198871 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T33948 NZ_AP021963:2195887-2195989 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT33948 NZ_AP021963:c2196027-2195759 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
