Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
Location | 48207..48766 | Replicon | plasmid pWP2-S18-ESBL-08_2 |
Accession | NZ_AP021948 | ||
Organism | Escherichia coli strain WP2-S18-ESBL-08 |
Toxin (Protein)
Gene name | relE | Uniprot ID | U9YB49 |
Locus tag | H7R07_RS26315 | Protein ID | WP_000421259.1 |
Coordinates | 48491..48766 (+) | Length | 92 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | U9Y625 |
Locus tag | H7R07_RS26310 | Protein ID | WP_001178087.1 |
Coordinates | 48207..48491 (+) | Length | 95 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
H7R07_RS26290 | 43856..44389 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
H7R07_RS26295 | 44831..45118 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
H7R07_RS26300 | 45036..45299 | - | 264 | WP_001324596.1 | ash family protein | - |
H7R07_RS26305 | 46272..47303 | + | 1032 | WP_000907852.1 | replication initiation protein | - |
H7R07_RS26310 | 48207..48491 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
H7R07_RS26315 | 48491..48766 | + | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
H7R07_RS26320 | 48872..49153 | + | 282 | WP_001105066.1 | hypothetical protein | - |
H7R07_RS26325 | 49345..49611 | - | 267 | WP_000627832.1 | hypothetical protein | - |
H7R07_RS26330 | 49611..50105 | - | 495 | WP_015058884.1 | hypothetical protein | - |
H7R07_RS26335 | 50161..50763 | - | 603 | WP_061671620.1 | proQ/FINO family protein | - |
H7R07_RS26340 | 51117..52463 | + | 1347 | WP_001132027.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Conjugative plasmid | blaCTX-M-8 | - | 1..91630 | 91630 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 10736.45 Da Isoelectric Point: 9.9324
>T33918 WP_000421259.1 NZ_AP021948:48491-48766 [Escherichia coli]
MELKWTSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLTHPRMGEQLFQFEPREVRRIFAGEYEIRYELTGQTIY
VLRLWHTRENR
MELKWTSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLTHPRMGEQLFQFEPREVRRIFAGEYEIRYELTGQTIY
VLRLWHTRENR
Download Length: 276 bp
>T33918 NZ_AP021948:48491-48766 [Escherichia coli]
ATGGAACTGAAGTGGACCAGTAAGGCGCTTTCTGATTTGGCGCGGTTATATGATTTTCTGGTGCTGGCCAGTAAACCTGC
GGCCGCCAGAACGGTGCAGTCCCTGACACAGGCTCCGGTCATTCTGTTAACTCATCCACGTATGGGGGAACAGTTATTTC
AGTTTGAACCCAGGGAGGTCAGACGGATTTTTGCTGGCGAGTACGAAATCCGTTACGAACTTACTGGCCAGACTATTTAT
GTATTGCGCCTGTGGCACACACGAGAAAACAGGTAG
ATGGAACTGAAGTGGACCAGTAAGGCGCTTTCTGATTTGGCGCGGTTATATGATTTTCTGGTGCTGGCCAGTAAACCTGC
GGCCGCCAGAACGGTGCAGTCCCTGACACAGGCTCCGGTCATTCTGTTAACTCATCCACGTATGGGGGAACAGTTATTTC
AGTTTGAACCCAGGGAGGTCAGACGGATTTTTGCTGGCGAGTACGAAATCCGTTACGAACTTACTGGCCAGACTATTTAT
GTATTGCGCCTGTGGCACACACGAGAAAACAGGTAG
Antitoxin
Download Length: 95 a.a. Molecular weight: 10488.92 Da Isoelectric Point: 5.6558
>AT33918 WP_001178087.1 NZ_AP021948:48207-48491 [Escherichia coli]
MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWIIKQALSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQAW
ADSLSTDNPLPVPR
MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWIIKQALSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQAW
ADSLSTDNPLPVPR
Download Length: 285 bp
>AT33918 NZ_AP021948:48207-48491 [Escherichia coli]
ATGCAAATGAAAAACAATACCGCACAGGCAACAAAAGTAATTACCGCGCATGTGCCATTACCTATGGCTGATAAAGTCGA
CCAGATGGCCGCCAGACTGGAACGCTCCCGGGGCTGGATTATCAAACAGGCGCTTTCTGCATGGCTTGCCCAGGAGGAGG
AGCGTAATCGCCTGACGCTGGAAGCCCTGGACGATGTGACATCCGGACAGGTTATCGACCATCAGGCTGTACAGGCCTGG
GCGGACAGCCTCAGTACTGACAATCCGTTACCGGTGCCACGCTGA
ATGCAAATGAAAAACAATACCGCACAGGCAACAAAAGTAATTACCGCGCATGTGCCATTACCTATGGCTGATAAAGTCGA
CCAGATGGCCGCCAGACTGGAACGCTCCCGGGGCTGGATTATCAAACAGGCGCTTTCTGCATGGCTTGCCCAGGAGGAGG
AGCGTAATCGCCTGACGCTGGAAGCCCTGGACGATGTGACATCCGGACAGGTTATCGACCATCAGGCTGTACAGGCCTGG
GCGGACAGCCTCAGTACTGACAATCCGTTACCGGTGCCACGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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