Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 48207..48766 Replicon plasmid pWP2-S18-ESBL-08_2
Accession NZ_AP021948
Organism Escherichia coli strain WP2-S18-ESBL-08

Toxin (Protein)


Gene name relE Uniprot ID U9YB49
Locus tag H7R07_RS26315 Protein ID WP_000421259.1
Coordinates 48491..48766 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID U9Y625
Locus tag H7R07_RS26310 Protein ID WP_001178087.1
Coordinates 48207..48491 (+) Length 95 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H7R07_RS26290 43856..44389 - 534 WP_001372168.1 transcription termination factor NusG -
H7R07_RS26295 44831..45118 - 288 WP_000074849.1 conjugal transfer protein TraA -
H7R07_RS26300 45036..45299 - 264 WP_001324596.1 ash family protein -
H7R07_RS26305 46272..47303 + 1032 WP_000907852.1 replication initiation protein -
H7R07_RS26310 48207..48491 + 285 WP_001178087.1 ribbon-helix-helix domain-containing protein Antitoxin
H7R07_RS26315 48491..48766 + 276 WP_000421259.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
H7R07_RS26320 48872..49153 + 282 WP_001105066.1 hypothetical protein -
H7R07_RS26325 49345..49611 - 267 WP_000627832.1 hypothetical protein -
H7R07_RS26330 49611..50105 - 495 WP_015058884.1 hypothetical protein -
H7R07_RS26335 50161..50763 - 603 WP_061671620.1 proQ/FINO family protein -
H7R07_RS26340 51117..52463 + 1347 WP_001132027.1 hypothetical protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid blaCTX-M-8 - 1..91630 91630


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 92 a.a.        Molecular weight: 10736.45 Da        Isoelectric Point: 9.9324

>T33918 WP_000421259.1 NZ_AP021948:48491-48766 [Escherichia coli]
MELKWTSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLTHPRMGEQLFQFEPREVRRIFAGEYEIRYELTGQTIY
VLRLWHTRENR

Download         Length: 276 bp

>T33918 NZ_AP021948:48491-48766 [Escherichia coli]
ATGGAACTGAAGTGGACCAGTAAGGCGCTTTCTGATTTGGCGCGGTTATATGATTTTCTGGTGCTGGCCAGTAAACCTGC
GGCCGCCAGAACGGTGCAGTCCCTGACACAGGCTCCGGTCATTCTGTTAACTCATCCACGTATGGGGGAACAGTTATTTC
AGTTTGAACCCAGGGAGGTCAGACGGATTTTTGCTGGCGAGTACGAAATCCGTTACGAACTTACTGGCCAGACTATTTAT
GTATTGCGCCTGTGGCACACACGAGAAAACAGGTAG

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10488.92 Da        Isoelectric Point: 5.6558

>AT33918 WP_001178087.1 NZ_AP021948:48207-48491 [Escherichia coli]
MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWIIKQALSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQAW
ADSLSTDNPLPVPR

Download         Length: 285 bp

>AT33918 NZ_AP021948:48207-48491 [Escherichia coli]
ATGCAAATGAAAAACAATACCGCACAGGCAACAAAAGTAATTACCGCGCATGTGCCATTACCTATGGCTGATAAAGTCGA
CCAGATGGCCGCCAGACTGGAACGCTCCCGGGGCTGGATTATCAAACAGGCGCTTTCTGCATGGCTTGCCCAGGAGGAGG
AGCGTAATCGCCTGACGCTGGAAGCCCTGGACGATGTGACATCCGGACAGGTTATCGACCATCAGGCTGTACAGGCCTGG
GCGGACAGCCTCAGTACTGACAATCCGTTACCGGTGCCACGCTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB U9YB49


Antitoxin

Source ID Structure
AlphaFold DB U9Y625

References