Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2192509..2192780 | Replicon | chromosome |
| Accession | NZ_AP021946 | ||
| Organism | Escherichia coli strain WP2-S18-ESBL-08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2192639..2192742 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2192509..2192780 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R07_RS10595 | 2189064..2189726 | - | 663 | WP_182913120.1 | exodeoxyribonuclease X | - |
| H7R07_RS10600 | 2189750..2190406 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H7R07_RS10605 | 2190508..2190738 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7R07_RS10610 | 2190877..2191251 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H7R07_RS10615 | 2191255..2192127 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| H7R07_RS10620 | 2192140..2192481 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2192509..2192780 | - | 272 | - | - | Antitoxin |
| - | 2192639..2192742 | + | 104 | - | - | Toxin |
| H7R07_RS10625 | 2192877..2193533 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H7R07_RS10630 | 2193534..2193725 | - | 192 | WP_000457842.1 | YebW family protein | - |
| H7R07_RS10635 | 2193830..2194066 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H7R07_RS10640 | 2194184..2195623 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33885 NZ_AP021946:2192639-2192742 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT33885 NZ_AP021946:c2192780-2192509 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
