Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1863245..1863390 | Replicon | chromosome |
| Accession | NZ_AP021929 | ||
| Organism | Klebsiella pneumoniae strain WP2-W18-ESBL-06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1863281..1863383 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1863245..1863390 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R50_RS09070 | 1858375..1860435 | + | 2061 | WP_032420218.1 | oligopeptidase B | - |
| H7R50_RS09075 | 1860439..1861098 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| H7R50_RS09080 | 1861177..1861407 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H7R50_RS09085 | 1861520..1861894 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| H7R50_RS09090 | 1861898..1862767 | + | 870 | WP_032420215.1 | copper homeostasis membrane protein CopD | - |
| H7R50_RS09095 | 1862784..1863122 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1863245..1863390 | - | 146 | - | - | Antitoxin |
| - | 1863281..1863383 | + | 103 | - | - | Toxin |
| H7R50_RS09100 | 1863758..1863901 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| H7R50_RS09105 | 1864006..1864974 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| H7R50_RS09110 | 1865131..1865784 | + | 654 | WP_016529030.1 | protein-serine/threonine phosphatase | - |
| H7R50_RS09115 | 1865781..1865972 | - | 192 | WP_002911395.1 | YebW family protein | - |
| H7R50_RS09120 | 1866070..1866309 | - | 240 | WP_002911393.1 | YebV family protein | - |
| H7R50_RS09125 | 1866425..1867858 | - | 1434 | WP_064149175.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T33761 NZ_AP021929:1863281-1863383 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT33761 NZ_AP021929:c1863390-1863245 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
