Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE-RHH |
Location | 2039119..2039632 | Replicon | chromosome |
Accession | NZ_AP021904 | ||
Organism | Pseudomonas sp. Ost2 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | KI243_RS09100 | Protein ID | WP_178991782.1 |
Coordinates | 2039119..2039403 (-) | Length | 95 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | KI243_RS09105 | Protein ID | WP_177057445.1 |
Coordinates | 2039393..2039632 (-) | Length | 80 a.a. |
Genomic Context
Location: 2036363..2037121 (759 bp)
Type: Others
Protein ID: Protein_1792
Type: Others
Protein ID: Protein_1792
Location: 2037235..2038644 (1410 bp)
Type: Others
Protein ID: WP_244861886.1
Type: Others
Protein ID: WP_244861886.1
Location: 2040956..2041426 (471 bp)
Type: Others
Protein ID: WP_212810710.1
Type: Others
Protein ID: WP_212810710.1
Location: 2043071..2043538 (468 bp)
Type: Others
Protein ID: WP_042934484.1
Type: Others
Protein ID: WP_042934484.1
Location: 2035984..2036287 (304 bp)
Type: Others
Protein ID: Protein_1791
Type: Others
Protein ID: Protein_1791
Location: 2039119..2039403 (285 bp)
Type: Toxin
Protein ID: WP_178991782.1
Type: Toxin
Protein ID: WP_178991782.1
Location: 2039393..2039632 (240 bp)
Type: Antitoxin
Protein ID: WP_177057445.1
Type: Antitoxin
Protein ID: WP_177057445.1
Location: 2039818..2040297 (480 bp)
Type: Others
Protein ID: WP_212810708.1
Type: Others
Protein ID: WP_212810708.1
Location: 2041437..2042846 (1410 bp)
Type: Others
Protein ID: WP_017123942.1
Type: Others
Protein ID: WP_017123942.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
KI243_RS32835 | 2035984..2036287 | - | 304 | Protein_1791 | bifunctional DNA primase/helicase | - |
KI243_RS09090 (PHLH7_17870) | 2036363..2037121 | + | 759 | Protein_1792 | hypothetical protein | - |
KI243_RS09095 (PHLH7_17880) | 2037235..2038644 | + | 1410 | WP_244861886.1 | hypothetical protein | - |
KI243_RS09100 | 2039119..2039403 | - | 285 | WP_178991782.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
KI243_RS09105 (PHLH7_17890) | 2039393..2039632 | - | 240 | WP_177057445.1 | ribbon-helix-helix protein, CopG family | Antitoxin |
KI243_RS09110 (PHLH7_17900) | 2039818..2040297 | - | 480 | WP_212810708.1 | Bro-N domain-containing protein | - |
KI243_RS09120 (PHLH7_17910) | 2040956..2041426 | + | 471 | WP_212810710.1 | DUF2442 domain-containing protein | - |
KI243_RS09125 (PHLH7_17920) | 2041437..2042846 | - | 1410 | WP_017123942.1 | DUF2252 domain-containing protein | - |
KI243_RS09130 (PHLH7_17930) | 2043071..2043538 | + | 468 | WP_042934484.1 | anti-virulence regulator CigR family protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
No matching records found |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 a.a. Molecular weight: 10995.75 Da Isoelectric Point: 11.1493
>T33684 WP_178991782.1 NZ_AP021904:c2039403-2039119 [Pseudomonas sp. Ost2]
MRVEWLKTALRNLDDAAAYIAQDNPQAAQAFMLEVRASVQRLAQFPAMGREGRIPGTREWPLPDLPYLIPYRIRNGRLQV
LRVFHTRRLPPDQW
MRVEWLKTALRNLDDAAAYIAQDNPQAAQAFMLEVRASVQRLAQFPAMGREGRIPGTREWPLPDLPYLIPYRIRNGRLQV
LRVFHTRRLPPDQW
Download Length: 285 bp
>T33684 NZ_AP021904:c2039403-2039119 [Pseudomonas sp. Ost2]
ATGCGCGTTGAATGGCTGAAAACCGCACTCAGGAATCTGGATGACGCAGCTGCCTATATCGCGCAAGACAATCCACAAGC
AGCTCAGGCCTTCATGCTTGAGGTGCGCGCCAGCGTCCAGCGGCTAGCGCAGTTTCCCGCTATGGGCCGTGAAGGACGAA
TTCCAGGAACACGAGAATGGCCTCTTCCCGACCTGCCTTATCTGATTCCATACCGTATTCGTAACGGTCGTCTACAAGTG
CTGCGCGTCTTCCATACTCGGCGACTACCGCCTGACCAATGGTGA
ATGCGCGTTGAATGGCTGAAAACCGCACTCAGGAATCTGGATGACGCAGCTGCCTATATCGCGCAAGACAATCCACAAGC
AGCTCAGGCCTTCATGCTTGAGGTGCGCGCCAGCGTCCAGCGGCTAGCGCAGTTTCCCGCTATGGGCCGTGAAGGACGAA
TTCCAGGAACACGAGAATGGCCTCTTCCCGACCTGCCTTATCTGATTCCATACCGTATTCGTAACGGTCGTCTACAAGTG
CTGCGCGTCTTCCATACTCGGCGACTACCGCCTGACCAATGGTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 8805.87 Da Isoelectric Point: 4.2584
>AT33684 WP_177057445.1 NZ_AP021904:c2039632-2039393 [Pseudomonas sp. Ost2]
MSVMSLRLPDEMAETLANLAKATGRSKSFLAIDALRDYLAREAWQIAEIQRAIEEADAGDFATDEEVEATFRKWGADAR
MSVMSLRLPDEMAETLANLAKATGRSKSFLAIDALRDYLAREAWQIAEIQRAIEEADAGDFATDEEVEATFRKWGADAR
Download Length: 240 bp
>AT33684 NZ_AP021904:c2039632-2039393 [Pseudomonas sp. Ost2]
ATGTCCGTTATGTCCCTACGTCTCCCCGACGAGATGGCTGAGACCCTCGCCAACCTGGCAAAAGCTACTGGCCGTAGTAA
ATCCTTCCTCGCCATCGATGCCCTACGGGACTACCTGGCCCGTGAAGCCTGGCAAATCGCCGAAATTCAGCGCGCTATAG
AAGAGGCTGATGCGGGAGACTTCGCCACGGACGAGGAAGTTGAAGCCACCTTCCGGAAATGGGGTGCCGATGCGCGTTGA
ATGTCCGTTATGTCCCTACGTCTCCCCGACGAGATGGCTGAGACCCTCGCCAACCTGGCAAAAGCTACTGGCCGTAGTAA
ATCCTTCCTCGCCATCGATGCCCTACGGGACTACCTGGCCCGTGAAGCCTGGCAAATCGCCGAAATTCAGCGCGCTATAG
AAGAGGCTGATGCGGGAGACTTCGCCACGGACGAGGAAGTTGAAGCCACCTTCCGGAAATGGGGTGCCGATGCGCGTTGA