Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/RelE-RHH
Location 2039119..2039632 Replicon chromosome
Accession NZ_AP021904
Organism Pseudomonas sp. Ost2

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag KI243_RS09100 Protein ID WP_178991782.1
Coordinates 2039119..2039403 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag KI243_RS09105 Protein ID WP_177057445.1
Coordinates 2039393..2039632 (-) Length 80 a.a.

Genomic Context


KI243_RS09090KI243_RS09095KI243_RS09120KI243_RS09130KI243_RS32835KI243_RS09100KI243_RS09105KI243_RS09110KI243_RS09125
Location: 2036363..2037121 (759 bp)
Type: Others
Protein ID: Protein_1792
Location: 2037235..2038644 (1410 bp)
Type: Others
Protein ID: WP_244861886.1
Location: 2040956..2041426 (471 bp)
Type: Others
Protein ID: WP_212810710.1
Location: 2043071..2043538 (468 bp)
Type: Others
Protein ID: WP_042934484.1
Location: 2035984..2036287 (304 bp)
Type: Others
Protein ID: Protein_1791
Location: 2039119..2039403 (285 bp)
Type: Toxin
Protein ID: WP_178991782.1
Location: 2039393..2039632 (240 bp)
Type: Antitoxin
Protein ID: WP_177057445.1
Location: 2039818..2040297 (480 bp)
Type: Others
Protein ID: WP_212810708.1
Location: 2041437..2042846 (1410 bp)
Type: Others
Protein ID: WP_017123942.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
KI243_RS328352035984..2036287-304Protein_1791bifunctional DNA primase/helicase-
KI243_RS09090 (PHLH7_17870)2036363..2037121+759Protein_1792hypothetical protein-
KI243_RS09095 (PHLH7_17880)2037235..2038644+1410WP_244861886.1hypothetical protein-
KI243_RS091002039119..2039403-285WP_178991782.1type II toxin-antitoxin system RelE/ParE family toxinToxin
KI243_RS09105 (PHLH7_17890)2039393..2039632-240WP_177057445.1ribbon-helix-helix protein, CopG familyAntitoxin
KI243_RS09110 (PHLH7_17900)2039818..2040297-480WP_212810708.1Bro-N domain-containing protein-
KI243_RS09120 (PHLH7_17910)2040956..2041426+471WP_212810710.1DUF2442 domain-containing protein-
KI243_RS09125 (PHLH7_17920)2041437..2042846-1410WP_017123942.1DUF2252 domain-containing protein-
KI243_RS09130 (PHLH7_17930)2043071..2043538+468WP_042934484.1anti-virulence regulator CigR family protein-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 95 a.a.        Molecular weight: 10995.75 Da        Isoelectric Point: 11.1493

>T33684 WP_178991782.1 NZ_AP021904:c2039403-2039119 [Pseudomonas sp. Ost2]
MRVEWLKTALRNLDDAAAYIAQDNPQAAQAFMLEVRASVQRLAQFPAMGREGRIPGTREWPLPDLPYLIPYRIRNGRLQV
LRVFHTRRLPPDQW

Download         Length: 285 bp

>T33684 NZ_AP021904:c2039403-2039119 [Pseudomonas sp. Ost2]
ATGCGCGTTGAATGGCTGAAAACCGCACTCAGGAATCTGGATGACGCAGCTGCCTATATCGCGCAAGACAATCCACAAGC
AGCTCAGGCCTTCATGCTTGAGGTGCGCGCCAGCGTCCAGCGGCTAGCGCAGTTTCCCGCTATGGGCCGTGAAGGACGAA
TTCCAGGAACACGAGAATGGCCTCTTCCCGACCTGCCTTATCTGATTCCATACCGTATTCGTAACGGTCGTCTACAAGTG
CTGCGCGTCTTCCATACTCGGCGACTACCGCCTGACCAATGGTGA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 8805.87 Da        Isoelectric Point: 4.2584

>AT33684 WP_177057445.1 NZ_AP021904:c2039632-2039393 [Pseudomonas sp. Ost2]
MSVMSLRLPDEMAETLANLAKATGRSKSFLAIDALRDYLAREAWQIAEIQRAIEEADAGDFATDEEVEATFRKWGADAR

Download         Length: 240 bp

>AT33684 NZ_AP021904:c2039632-2039393 [Pseudomonas sp. Ost2]
ATGTCCGTTATGTCCCTACGTCTCCCCGACGAGATGGCTGAGACCCTCGCCAACCTGGCAAAAGCTACTGGCCGTAGTAA
ATCCTTCCTCGCCATCGATGCCCTACGGGACTACCTGGCCCGTGAAGCCTGGCAAATCGCCGAAATTCAGCGCGCTATAG
AAGAGGCTGATGCGGGAGACTTCGCCACGGACGAGGAAGTTGAAGCCACCTTCCGGAAATGGGGTGCCGATGCGCGTTGA

Similar Proteins


Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures


Toxin

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Source
ID
Structure
No matching records found


Antitoxin

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Source
ID
Structure
No matching records found

References