Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2008461..2008732 | Replicon | chromosome |
| Accession | NZ_AP021894 | ||
| Organism | Escherichia coli strain 2018-10-1CC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2008591..2008694 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2008461..2008732 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRR23_RS09675 | 2005017..2005679 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HRR23_RS09680 | 2005703..2006359 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HRR23_RS09685 | 2006461..2006691 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HRR23_RS09690 | 2006830..2007204 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| HRR23_RS09695 | 2007208..2008080 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| HRR23_RS09700 | 2008093..2008434 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2008461..2008732 | - | 272 | - | - | Antitoxin |
| - | 2008591..2008694 | + | 104 | - | - | Toxin |
| HRR23_RS09705 | 2008829..2009485 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HRR23_RS09710 | 2009486..2009677 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HRR23_RS09715 | 2009782..2010018 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HRR23_RS09720 | 2010136..2011575 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33616 NZ_AP021894:2008591-2008694 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT33616 NZ_AP021894:c2008732-2008461 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
