Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2005924..2006195 | Replicon | chromosome |
| Accession | NZ_AP021893 | ||
| Organism | Escherichia coli strain 2018-06-4CC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2006054..2006157 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2005924..2006195 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRR20_RS09490 | 2002480..2003142 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HRR20_RS09495 | 2003166..2003822 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HRR20_RS09500 | 2003924..2004154 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HRR20_RS09505 | 2004293..2004667 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| HRR20_RS09510 | 2004671..2005543 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| HRR20_RS09515 | 2005556..2005897 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2005924..2006195 | - | 272 | - | - | Antitoxin |
| - | 2006054..2006157 | + | 104 | - | - | Toxin |
| HRR20_RS09520 | 2006292..2006948 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HRR20_RS09525 | 2006949..2007140 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HRR20_RS09530 | 2007245..2007481 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HRR20_RS09535 | 2007599..2009038 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33595 NZ_AP021893:2006054-2006157 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT33595 NZ_AP021893:c2006195-2005924 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
