Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 266085..266356 | Replicon | chromosome |
| Accession | NZ_AP021892 | ||
| Organism | Escherichia coli strain 2018-01-1CC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 266215..266318 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 266085..266356 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRR21_RS01305 | 262640..263302 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HRR21_RS01310 | 263326..263982 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| HRR21_RS01315 | 264084..264314 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HRR21_RS01320 | 264453..264827 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HRR21_RS01325 | 264831..265703 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HRR21_RS01330 | 265716..266057 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 266085..266356 | - | 272 | - | - | Antitoxin |
| - | 266215..266318 | + | 104 | - | - | Toxin |
| HRR21_RS01335 | 266453..267109 | + | 657 | WP_170888251.1 | protein-serine/threonine phosphatase | - |
| HRR21_RS01340 | 267110..267301 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HRR21_RS01345 | 267406..267642 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| HRR21_RS01350 | 267760..269199 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33569 NZ_AP021892:266215-266318 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT33569 NZ_AP021892:c266356-266085 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
