Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1939926..1940197 | Replicon | chromosome |
| Accession | NZ_AP021891 | ||
| Organism | Escherichia coli strain 2017.01.04CC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1940056..1940159 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1939926..1940197 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VEGS_RS09250 | 1936481..1937143 | - | 663 | WP_124038297.1 | exodeoxyribonuclease X | - |
| VEGS_RS09255 | 1937167..1937823 | - | 657 | WP_172409713.1 | carbon-nitrogen hydrolase family protein | - |
| VEGS_RS09260 | 1937925..1938155 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| VEGS_RS09265 | 1938294..1938668 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| VEGS_RS09270 | 1938672..1939544 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| VEGS_RS09275 | 1939557..1939898 | + | 342 | WP_124038296.1 | YebY family protein | - |
| - | 1939926..1940197 | - | 272 | - | - | Antitoxin |
| - | 1940056..1940159 | + | 104 | - | - | Toxin |
| VEGS_RS09280 | 1940294..1940950 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| VEGS_RS09285 | 1940951..1941142 | - | 192 | WP_001338167.1 | YebW family protein | - |
| VEGS_RS09290 | 1941247..1941483 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| VEGS_RS09295 | 1941601..1943040 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33553 NZ_AP021891:1940056-1940159 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT33553 NZ_AP021891:c1940197-1939926 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
