Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2641962..2642233 | Replicon | chromosome |
| Accession | NZ_AP021890 | ||
| Organism | Escherichia coli strain 2017.15.01CC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2642000..2642103 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2641962..2642233 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRR22_RS12515 | 2639119..2640558 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HRR22_RS12520 | 2640676..2640912 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HRR22_RS12525 | 2641017..2641208 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HRR22_RS12530 | 2641209..2641865 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2641962..2642233 | + | 272 | - | - | Antitoxin |
| - | 2642000..2642103 | - | 104 | - | - | Toxin |
| HRR22_RS12535 | 2642261..2642602 | - | 342 | WP_000976492.1 | YebY family protein | - |
| HRR22_RS12540 | 2642615..2643487 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HRR22_RS12545 | 2643491..2643865 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HRR22_RS12550 | 2644004..2644234 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HRR22_RS12555 | 2644336..2644992 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| HRR22_RS12560 | 2645016..2645678 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33530 NZ_AP021890:c2642103-2642000 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT33530 NZ_AP021890:2641962-2642233 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
