Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yoeB-relB/YoeB-YefM
Location 1627377..1627888 Replicon chromosome
Accession NZ_AP021861
Organism Lacipirellula parvula strain PX69

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag PLANPX_RS06185 Protein ID WP_152097891.1
Coordinates 1627377..1627637 (-) Length 87 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PLANPX_RS06190 Protein ID WP_172991900.1
Coordinates 1627634..1627888 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PLANPX_RS06170 1622655..1623233 - 579 WP_152097889.1 sigma-70 family RNA polymerase sigma factor -
PLANPX_RS06175 1624310..1625218 + 909 WP_152097890.1 hypothetical protein -
PLANPX_RS06180 1625291..1627249 - 1959 WP_152101795.1 acetate--CoA ligase -
PLANPX_RS06185 1627377..1627637 - 261 WP_152097891.1 Txe/YoeB family addiction module toxin Toxin
PLANPX_RS06190 1627634..1627888 - 255 WP_172991900.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
PLANPX_RS06195 1627949..1629124 - 1176 WP_152097893.1 alanine--glyoxylate aminotransferase family protein -
PLANPX_RS06200 1629149..1630138 - 990 WP_152097894.1 PmoA family protein -
PLANPX_RS06205 1630419..1631636 - 1218 WP_152097895.1 6-phosphofructokinase -
PLANPX_RS06210 1631864..1632574 - 711 WP_152097896.1 polyprenol monophosphomannose synthase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 10475.92 Da        Isoelectric Point: 8.4897

>T33386 WP_152097891.1 NZ_AP021861:c1627637-1627377 [Lacipirellula parvula]
MRVAFTESAWADYVWFQEHDRRLLKRINSLIKECLRTPFEGTGKPERLRADLTGYWSRRIDDEHRLVYTVSNDQLIIIAC
RYHYER

Download         Length: 261 bp

>T33386 NZ_AP021861:c1627637-1627377 [Lacipirellula parvula]
ATGAGAGTCGCGTTCACGGAATCTGCGTGGGCCGATTACGTCTGGTTTCAGGAGCACGACCGGCGTCTACTCAAACGGAT
CAACTCGCTGATCAAAGAGTGTTTGAGAACTCCGTTCGAAGGGACCGGCAAGCCTGAACGACTGCGGGCGGATCTCACCG
GCTACTGGTCTCGCCGCATCGACGACGAACATCGCCTCGTCTACACCGTCAGTAATGATCAATTGATCATCATTGCCTGC
CGGTACCACTACGAGCGGTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9161.20 Da        Isoelectric Point: 4.0602

>AT33386 WP_172991900.1 NZ_AP021861:c1627888-1627634 [Lacipirellula parvula]
MNVIPVDSARQDFDGFVARVLATAEPVALSTSAGEQVVVMPLEEYEAWQETAYLLKSPANAAHLRQSITEASQGAFVDHE
LDEK

Download         Length: 255 bp

>AT33386 NZ_AP021861:c1627888-1627634 [Lacipirellula parvula]
ATGAACGTCATTCCAGTCGATAGCGCCCGCCAAGATTTTGATGGCTTCGTCGCGCGGGTGCTCGCCACCGCCGAGCCGGT
GGCGCTGAGCACGTCGGCCGGCGAACAAGTCGTTGTGATGCCGCTCGAAGAATACGAAGCTTGGCAAGAAACGGCGTACC
TGCTCAAGTCGCCCGCCAACGCGGCTCATCTCCGCCAGTCAATTACCGAGGCCTCGCAAGGCGCTTTCGTCGACCACGAA
CTCGACGAAAAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References