Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1917846..1918117 | Replicon | chromosome |
| Accession | NZ_AP019856 | ||
| Organism | Escherichia coli O8:H8 strain 16F5M1D1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1917884..1917987 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1917846..1918117 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EcoO8H8_RS09070 | 1915003..1916442 | + | 1440 | WP_096307051.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EcoO8H8_RS09075 | 1916560..1916796 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EcoO8H8_RS09080 | 1916901..1917092 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EcoO8H8_RS09085 | 1917093..1917749 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1917846..1918117 | + | 272 | - | - | Antitoxin |
| - | 1917884..1917987 | - | 104 | - | - | Toxin |
| EcoO8H8_RS09090 | 1918145..1918486 | - | 342 | WP_000976492.1 | YebY family protein | - |
| EcoO8H8_RS09095 | 1918499..1919371 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EcoO8H8_RS09100 | 1919375..1919749 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EcoO8H8_RS09105 | 1919888..1920118 | + | 231 | WP_000916765.1 | DNA polymerase III subunit theta | - |
| EcoO8H8_RS09110 | 1920220..1920876 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EcoO8H8_RS09115 | 1920900..1921562 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33191 NZ_AP019856:c1917987-1917884 [Escherichia coli O8:H8]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT33191 NZ_AP019856:1917846-1918117 [Escherichia coli O8:H8]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
