Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2657744..2657945 | Replicon | chromosome |
| Accession | NZ_AP019817 | ||
| Organism | Enterobacter hormaechei subsp. hoffmannii strain OIPH-N069 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2657749..2657852 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2657744..2657945 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G7Y81_RS12555 | 2654012..2655454 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G7Y81_RS12560 | 2655559..2655798 | + | 240 | WP_006811010.1 | YebV family protein | - |
| G7Y81_RS12565 | 2655833..2656477 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| G7Y81_RS12570 | 2656645..2657625 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| G7Y81_RS12575 | 2657671..2657868 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2657744..2657945 | + | 202 | - | - | Antitoxin |
| - | 2657749..2657852 | - | 104 | - | - | Toxin |
| G7Y81_RS12580 | 2657994..2658332 | - | 339 | WP_022648464.1 | YebY family protein | - |
| G7Y81_RS12585 | 2658349..2659218 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| G7Y81_RS12590 | 2659220..2659591 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| G7Y81_RS12595 | 2659729..2659959 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| G7Y81_RS12600 | 2660071..2660709 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| G7Y81_RS12605 | 2660734..2661396 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33130 NZ_AP019817:c2657852-2657749 [Enterobacter hormaechei subsp. hoffmannii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT33130 NZ_AP019817:2657744-2657945 [Enterobacter hormaechei subsp. hoffmannii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
