Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1314826..1315097 | Replicon | chromosome |
| Accession | NZ_AP019803 | ||
| Organism | Escherichia coli strain KY 1497 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1314956..1315059 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1314826..1315097 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECKY1497_RS06105 | 1311381..1312043 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ECKY1497_RS06110 | 1312067..1312723 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| ECKY1497_RS06115 | 1312825..1313055 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECKY1497_RS06120 | 1313194..1313568 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| ECKY1497_RS06125 | 1313572..1314444 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| ECKY1497_RS06130 | 1314457..1314798 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 1314826..1315097 | - | 272 | - | - | Antitoxin |
| - | 1314956..1315059 | + | 104 | - | - | Toxin |
| ECKY1497_RS06135 | 1315194..1315850 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| ECKY1497_RS06140 | 1315851..1316042 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ECKY1497_RS06145 | 1316147..1316383 | - | 237 | WP_001295499.1 | YebV family protein | - |
| ECKY1497_RS06150 | 1316501..1317940 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33087 NZ_AP019803:1314956-1315059 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT33087 NZ_AP019803:c1315097-1314826 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
