Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-YefM |
| Location | 1909573..1910122 | Replicon | chromosome |
| Accession | NZ_AP019798 | ||
| Organism | Vibrio rotiferianus strain AM7 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | A0A2K7SRW8 |
| Locus tag | VroAM7_RS08730 | Protein ID | WP_015296889.1 |
| Coordinates | 1909823..1910122 (+) | Length | 100 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | A0A347UQT2 |
| Locus tag | VroAM7_RS08725 | Protein ID | WP_005442033.1 |
| Coordinates | 1909573..1909815 (+) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VroAM7_RS27135 | 1905191..1905283 | - | 93 | WP_017790380.1 | DUF3265 domain-containing protein | - |
| VroAM7_RS08675 | 1905311..1905598 | - | 288 | WP_015296903.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| VroAM7_RS08680 | 1905595..1905876 | - | 282 | WP_000086647.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| VroAM7_RS08685 | 1906053..1907267 | - | 1215 | WP_143692558.1 | DUF3644 domain-containing protein | - |
| VroAM7_RS08690 | 1907300..1907392 | - | 93 | WP_193343211.1 | DUF3265 domain-containing protein | - |
| VroAM7_RS08695 | 1907413..1907976 | - | 564 | WP_143692559.1 | hypothetical protein | - |
| VroAM7_RS08700 | 1908003..1908092 | - | 90 | WP_143693213.1 | DUF3265 domain-containing protein | - |
| VroAM7_RS08710 | 1908741..1909043 | - | 303 | WP_143692561.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| VroAM7_RS08715 | 1909031..1909288 | - | 258 | WP_005448240.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| VroAM7_RS08720 | 1909370..1909459 | - | 90 | WP_072609597.1 | DUF3265 domain-containing protein | - |
| VroAM7_RS08725 | 1909573..1909815 | + | 243 | WP_005442033.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| VroAM7_RS08730 | 1909823..1910122 | + | 300 | WP_015296889.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| VroAM7_RS08735 | 1910301..1910681 | - | 381 | WP_143692562.1 | STAS/SEC14 domain-containing protein | - |
| VroAM7_RS08750 | 1911303..1911434 | - | 132 | WP_143692563.1 | DUF3265 domain-containing protein | - |
| VroAM7_RS08755 | 1911511..1911795 | + | 285 | WP_005398409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| VroAM7_RS08760 | 1911792..1912070 | + | 279 | WP_143692564.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| VroAM7_RS08765 | 1912227..1912595 | - | 369 | WP_143692565.1 | VOC family protein | - |
| VroAM7_RS08770 | 1912643..1912735 | - | 93 | WP_079400283.1 | DUF3265 domain-containing protein | - |
| VroAM7_RS08775 | 1912849..1913817 | + | 969 | WP_143692547.1 | IS30-like element ISVa6 family transposase | - |
| VroAM7_RS08780 | 1913854..1914624 | - | 771 | WP_172622550.1 | FRG domain-containing protein | - |
| VroAM7_RS08785 | 1914664..1914789 | - | 126 | WP_143693220.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | VP1611 | 1711712..2127777 | 416065 | |
| - | flank | IS/Tn | - | - | 1913041..1913817 | 776 | |
| - | inside | Integron | - | - | 1889467..1947985 | 58518 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11502.11 Da Isoelectric Point: 9.3224
>T33070 WP_015296889.1 NZ_AP019798:1909823-1910122 [Vibrio rotiferianus]
MQKNKYKLSNLAQSHLRKVKNYTVENFSELQWRNYKDTLLSGFQMLADNPGLGRSCDEIYPNGFYFPIGKHTAYFTKEDD
FILVVAVLGQSQLPQNHLK
MQKNKYKLSNLAQSHLRKVKNYTVENFSELQWRNYKDTLLSGFQMLADNPGLGRSCDEIYPNGFYFPIGKHTAYFTKEDD
FILVVAVLGQSQLPQNHLK
Download Length: 300 bp
>T33070 NZ_AP019798:1909823-1910122 [Vibrio rotiferianus]
ATGCAAAAGAACAAATACAAGCTAAGTAACTTAGCACAATCTCACTTGCGCAAGGTCAAAAACTACACTGTTGAAAACTT
TTCTGAATTACAGTGGCGCAACTATAAAGACACTTTGCTATCGGGGTTTCAGATGCTAGCTGATAATCCAGGTTTAGGAA
GAAGTTGTGACGAGATATACCCAAATGGCTTTTATTTTCCGATTGGAAAACACACAGCTTATTTCACCAAAGAAGATGAC
TTTATCTTAGTCGTTGCTGTTTTAGGTCAATCACAACTACCCCAGAATCACCTGAAATAA
ATGCAAAAGAACAAATACAAGCTAAGTAACTTAGCACAATCTCACTTGCGCAAGGTCAAAAACTACACTGTTGAAAACTT
TTCTGAATTACAGTGGCGCAACTATAAAGACACTTTGCTATCGGGGTTTCAGATGCTAGCTGATAATCCAGGTTTAGGAA
GAAGTTGTGACGAGATATACCCAAATGGCTTTTATTTTCCGATTGGAAAACACACAGCTTATTTCACCAAAGAAGATGAC
TTTATCTTAGTCGTTGCTGTTTTAGGTCAATCACAACTACCCCAGAATCACCTGAAATAA
Antitoxin
Download Length: 81 a.a. Molecular weight: 9047.26 Da Isoelectric Point: 5.6926
>AT33070 WP_005442033.1 NZ_AP019798:1909573-1909815 [Vibrio rotiferianus]
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDTVVVMSIRDFEELEAMKVEYLKHCFKSAKEDLNNGNTVDGESFLNSL
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDTVVVMSIRDFEELEAMKVEYLKHCFKSAKEDLNNGNTVDGESFLNSL
Download Length: 243 bp
>AT33070 NZ_AP019798:1909573-1909815 [Vibrio rotiferianus]
ATGCATACATTAACAGCCAATGATGCCAAACGAAATTTCGGCGAACTACTTCTAAGCGCACAACGCGAACCAGTAAAAAT
CAGCAAAAACAGTAAAGATACTGTCGTTGTCATGTCCATTCGTGACTTTGAAGAGCTAGAAGCTATGAAAGTTGAGTACC
TCAAACACTGCTTTAAATCAGCCAAAGAAGACTTGAACAATGGGAACACTGTTGATGGCGAAAGCTTTCTAAATTCGCTG
TAA
ATGCATACATTAACAGCCAATGATGCCAAACGAAATTTCGGCGAACTACTTCTAAGCGCACAACGCGAACCAGTAAAAAT
CAGCAAAAACAGTAAAGATACTGTCGTTGTCATGTCCATTCGTGACTTTGAAGAGCTAGAAGCTATGAAAGTTGAGTACC
TCAAACACTGCTTTAAATCAGCCAAAGAAGACTTGAACAATGGGAACACTGTTGATGGCGAAAGCTTTCTAAATTCGCTG
TAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2K7SRW8 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UQT2 |