Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 3661453..3661936 Replicon chromosome
Accession NZ_AP019782
Organism Methylogaea oryzae strain E10

Toxin (Protein)


Gene name - Uniprot ID A0A8D4VSR3
Locus tag K5607_RS16265 Protein ID WP_054773230.1
Coordinates 3661453..3661722 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID A0A8D4VR80
Locus tag K5607_RS16270 Protein ID WP_054773229.1
Coordinates 3661703..3661936 (+) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K5607_RS16235 (MoryE10_31720) 3657157..3657849 - 693 WP_054774163.1 hypothetical protein -
K5607_RS16240 (MoryE10_31730) 3657846..3658484 - 639 WP_054774162.1 DUF2238 domain-containing protein -
K5607_RS16245 (MoryE10_31740) 3658566..3659333 + 768 WP_221047633.1 exodeoxyribonuclease III -
K5607_RS16250 (MoryE10_31750) 3659340..3659819 + 480 WP_221047634.1 hypothetical protein -
K5607_RS16255 (MoryE10_31760) 3659833..3660459 - 627 WP_082411644.1 chemoreceptor glutamine deamidase CheD -
K5607_RS16260 (MoryE10_31770) 3660663..3660986 - 324 WP_221047635.1 DUF5710 domain-containing protein -
K5607_RS16265 (MoryE10_31780) 3661453..3661722 + 270 WP_054773230.1 BrnT family toxin Toxin
K5607_RS16270 (MoryE10_31790) 3661703..3661936 + 234 WP_054773229.1 CopG family antitoxin Antitoxin
K5607_RS16275 (MoryE10_31810) 3662204..3665083 - 2880 WP_156302357.1 hypothetical protein -
K5607_RS16280 (MoryE10_31820) 3665669..3666049 - 381 WP_156302356.1 hypothetical protein -
K5607_RS16285 (MoryE10_31830) 3666192..3666497 - 306 WP_221047636.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(5-80)

Antitoxin

CopG antitoxin

(7-69)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10278.43 Da        Isoelectric Point: 4.5849

>T33057 WP_054773230.1 NZ_AP019782:3661453-3661722 [Methylogaea oryzae]
MGFEYDQDKSDANRAKHGIDFDEAQALWDDPDLLEIPARDTDEPRCLVVGKIGNKHWSAVVTYRSENIRLISVRRSRKEE
VEIYESLGI

Download         Length: 270 bp

>T33057 NZ_AP019782:3661453-3661722 [Methylogaea oryzae]
ATGGGCTTCGAGTACGACCAAGACAAAAGCGACGCCAACCGGGCCAAGCACGGCATCGACTTCGATGAAGCGCAAGCCCT
GTGGGACGATCCCGACCTACTCGAAATCCCGGCCCGAGACACCGACGAACCGCGCTGCCTGGTTGTCGGCAAGATCGGCA
ACAAGCACTGGTCGGCCGTCGTCACCTATCGCAGCGAAAACATTCGCCTGATTTCCGTCAGACGATCCCGAAAAGAGGAA
GTGGAAATCTATGAAAGCCTCGGAATTTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8858.20 Da        Isoelectric Point: 8.7560

>AT33057 WP_054773229.1 NZ_AP019782:3661703-3661936 [Methylogaea oryzae]
MKASEFDQRFDADEDVTQLLDLAQARRPGLVSKRVNVDFPAWMVHSLDKEARKLGVTRQSLIKLWLADKLEHPKQAV

Download         Length: 234 bp

>AT33057 NZ_AP019782:3661703-3661936 [Methylogaea oryzae]
ATGAAAGCCTCGGAATTTGACCAGCGTTTCGACGCCGACGAAGACGTCACCCAACTCCTCGACCTGGCCCAAGCCCGCCG
CCCCGGCCTCGTCTCCAAGCGCGTCAACGTCGATTTCCCCGCCTGGATGGTGCACTCCCTCGACAAGGAAGCCCGCAAGC
TGGGAGTAACCCGTCAATCCCTCATCAAGCTATGGCTTGCCGATAAGCTGGAACATCCCAAGCAGGCGGTCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References