Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yoeB-relB/YoeB-YefM
Location 52323..52825 Replicon chromosome
Accession NZ_AP019782
Organism Methylogaea oryzae strain E10

Toxin (Protein)


Gene name yoeB Uniprot ID A0A8D5AI78
Locus tag K5607_RS00270 Protein ID WP_054773426.1
Coordinates 52323..52577 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag K5607_RS00275 Protein ID WP_082411478.1
Coordinates 52574..52825 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K5607_RS00250 (MoryE10_00500) 47545..48117 - 573 WP_221047855.1 potassium-transporting ATPase subunit KdpC -
K5607_RS00255 (MoryE10_00510) 48130..50202 - 2073 WP_221047856.1 potassium-transporting ATPase subunit KdpB -
K5607_RS00260 (MoryE10_00530) 50516..51535 + 1020 WP_082411479.1 DUF4365 and DUF1817 domain-containing protein -
K5607_RS00265 (MoryE10_00540) 51691..52227 + 537 WP_221047857.1 transposase -
K5607_RS00270 (MoryE10_00550) 52323..52577 - 255 WP_054773426.1 Txe/YoeB family addiction module toxin Toxin
K5607_RS00275 (MoryE10_00560) 52574..52825 - 252 WP_082411478.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
K5607_RS00280 (MoryE10_00570) 52906..54615 - 1710 WP_054773424.1 potassium-transporting ATPase subunit KdpA -
K5607_RS00285 54615..54704 - 90 WP_054773423.1 potassium-transporting ATPase subunit F -
K5607_RS00290 (MoryE10_00580) 55059..56270 - 1212 WP_246598919.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10198.73 Da        Isoelectric Point: 8.0768

>T33052 WP_054773426.1 NZ_AP019782:c52577-52323 [Methylogaea oryzae]
VKLIFSDEAWEDYLHWQKQDKRMVERINKLICEVQREPFSGVGKPEPLKHALSGFWSRRITDEHRMVYRIANDALEIVQL
RFHY

Download         Length: 255 bp

>T33052 NZ_AP019782:c52577-52323 [Methylogaea oryzae]
GTGAAGCTGATCTTCTCGGACGAGGCCTGGGAAGATTACCTGCATTGGCAAAAGCAAGATAAGCGCATGGTGGAACGGAT
CAACAAGCTGATCTGTGAAGTACAGCGCGAACCGTTCAGCGGAGTGGGCAAGCCCGAGCCATTGAAACATGCACTATCGG
GCTTTTGGTCACGGCGGATTACGGACGAGCATCGCATGGTGTACCGCATAGCCAATGATGCGCTGGAAATTGTGCAACTC
CGTTTTCACTACTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9108.35 Da        Isoelectric Point: 5.0349

>AT33052 WP_082411478.1 NZ_AP019782:c52825-52574 [Methylogaea oryzae]
MDAITYTTARANLASTMDRVCNDHEALIITRNGEQSVVMLSLEDYKALEETAYLLRTPANAKRLLSAIAQLNAGKGVEQE
RAP

Download         Length: 252 bp

>AT33052 NZ_AP019782:c52825-52574 [Methylogaea oryzae]
ATGGACGCGATTACTTACACGACCGCTCGTGCAAACCTCGCCAGCACAATGGATAGGGTTTGCAACGACCACGAGGCGTT
GATCATTACCCGCAACGGCGAACAGTCCGTTGTGATGCTTTCGCTCGAAGACTACAAGGCGCTGGAGGAAACCGCCTATC
TCCTGCGTACTCCCGCCAACGCCAAGCGGCTTCTTTCCGCCATTGCACAACTGAACGCCGGCAAAGGCGTCGAGCAAGAA
CGGGCCCCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References