Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2270221..2270492 | Replicon | chromosome |
| Accession | NZ_AP019761 | ||
| Organism | Escherichia coli O111:H- strain 110512 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2270259..2270362 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2270221..2270492 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC110512_RS11670 | 2267378..2268817 | + | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EC110512_RS11675 | 2268935..2269171 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EC110512_RS11680 | 2269276..2269467 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EC110512_RS11685 | 2269468..2270124 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2270221..2270492 | + | 272 | - | - | Antitoxin |
| - | 2270259..2270362 | - | 104 | - | - | Toxin |
| EC110512_RS11690 | 2270520..2270861 | - | 342 | WP_000976492.1 | YebY family protein | - |
| EC110512_RS11695 | 2270874..2271746 | - | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| EC110512_RS11700 | 2271750..2272124 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EC110512_RS11705 | 2272263..2272493 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EC110512_RS11710 | 2272595..2273251 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EC110512_RS11715 | 2273275..2273937 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33017 NZ_AP019761:c2270362-2270259 [Escherichia coli O111:H-]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT33017 NZ_AP019761:2270221-2270492 [Escherichia coli O111:H-]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
