Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2034200..2034332 | Replicon | chromosome |
| Accession | NZ_AP019753 | ||
| Organism | Pantoea ananatis strain FU-01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2034235..2034332 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2034200..2034332 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PAFU01_RS09495 (PAFU01_18540) | 2029383..2031455 | + | 2073 | WP_014605680.1 | prolyl oligopeptidase family serine peptidase | - |
| PAFU01_RS09500 (PAFU01_18550) | 2031439..2032110 | - | 672 | WP_015700171.1 | exodeoxyribonuclease X | - |
| PAFU01_RS09505 (PAFU01_18560) | 2032110..2032340 | - | 231 | WP_019105100.1 | DNA polymerase III subunit theta | - |
| PAFU01_RS09510 (PAFU01_18570) | 2032491..2032865 | + | 375 | WP_029568849.1 | copper homeostasis periplasmic binding protein CopC | - |
| PAFU01_RS09515 (PAFU01_18580) | 2032870..2033745 | + | 876 | WP_116197585.1 | copper homeostasis membrane protein CopD | - |
| PAFU01_RS09520 (PAFU01_18590) | 2033773..2034120 | + | 348 | WP_014593872.1 | YebY family protein | - |
| - | 2034200..2034332 | - | 133 | - | - | Antitoxin |
| - | 2034235..2034332 | + | 98 | - | - | Toxin |
| PAFU01_RS09525 (PAFU01_18600) | 2034473..2036017 | - | 1545 | WP_014593871.1 | methyl-accepting chemotaxis protein | - |
| PAFU01_RS09530 (PAFU01_18610) | 2036507..2037211 | - | 705 | WP_265166090.1 | GntR family transcriptional regulator | - |
| PAFU01_RS09535 (PAFU01_18620) | 2037491..2039113 | + | 1623 | WP_013026056.1 | alpha-glucoside-specific PTS transporter subunit IIBC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 bp
>T32989 NZ_AP019753:2034235-2034332 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 133 bp
>AT32989 NZ_AP019753:c2034332-2034200 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
