32957

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) TsdAT/-
Location 832239..832748 Replicon chromosome
Accession NZ_AP019721
Organism Staphylococcus epidermidis strain NBRC 100911

Toxin (Protein)


Gene name TsdT Uniprot ID Q5HMD5
Locus tag FNL83_RS04085 Protein ID WP_001829980.1
Coordinates 832539..832748 (+) Length 70 a.a.

Antitoxin (Protein)


Gene name TsdA Uniprot ID Q5HMD4
Locus tag FNL83_RS04080 Protein ID WP_001829893.1
Coordinates 832239..832532 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FNL83_RS04055 827247..828035 + 789 WP_002469583.1 hydroxyethylthiazole kinase -
FNL83_RS04060 828041..828679 + 639 WP_002505076.1 thiamine phosphate synthase -
FNL83_RS04065 828768..829640 + 873 WP_002470121.1 membrane protein insertase YidC -
FNL83_RS04070 829746..830399 - 654 WP_001829983.1 HD domain-containing protein -
FNL83_RS04075 830581..832065 - 1485 WP_002457116.1 cardiolipin synthase -
FNL83_RS04080 832239..832532 + 294 WP_001829893.1 copper-sensing transcriptional repressor CsoR Antitoxin
FNL83_RS04085 832539..832748 + 210 WP_001829980.1 heavy-metal-associated domain-containing protein Toxin
FNL83_RS04090 832891..833028 + 138 WP_001829949.1 hypothetical protein -
FNL83_RS04095 833127..834338 - 1212 WP_002486299.1 rod shape-determining protein RodA -
FNL83_RS04100 834729..835802 + 1074 WP_002468311.1 D-alanine--D-alanine ligase -
FNL83_RS04105 835814..837169 + 1356 WP_002457113.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Metal-sensitive transcriptional repressor

(4-95)


Sequences

Toxin        


Download         Length: 70 a.a.        Molecular weight: 7987.24 Da        Isoelectric Point: 7.0080

>T32957 WP_001829980.1 NZ_AP019721:832539-832748 [Staphylococcus epidermidis]
MKLKKGLINVSGIKTTEQAKQLKDHLSKMIGINSVDIDYQMNEIRVEFDTPANLNNIEKEIYDYGFRIL

Download         Length: 210 bp

>T32957 NZ_AP019721:832539-832748 [Staphylococcus epidermidis]
ATGAAATTGAAAAAAGGATTGATAAATGTTTCAGGTATTAAAACAACTGAACAAGCTAAACAGCTCAAAGATCATTTATC
TAAGATGATAGGCATCAATAGTGTGGATATCGATTACCAAATGAATGAGATTCGAGTAGAATTTGACACTCCTGCAAATT
TAAATAACATTGAAAAAGAAATTTACGATTACGGATTTCGTATTTTATAA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11070.65 Da        Isoelectric Point: 5.5778

>AT32957 WP_001829893.1 NZ_AP019721:832239-832532 [Staphylococcus epidermidis]
MADMESAHHSEQIKTNLKSRLNRIEGQVRAINRMIDDDVYCDDVLTQIRATRSALNSVATKLLDHHMKGCIMEKINDGAQ
EEAMDELLVTFQKLIKD

Download         Length: 294 bp

>AT32957 NZ_AP019721:832239-832532 [Staphylococcus epidermidis]
ATGGCAGACATGGAGAGTGCACATCACTCAGAGCAAATAAAAACAAATTTAAAATCAAGATTAAATAGAATAGAAGGTCA
AGTAAGAGCAATAAATCGTATGATTGATGATGACGTTTACTGTGATGATGTACTAACTCAAATTAGAGCAACACGTTCAG
CATTGAATAGTGTAGCTACTAAATTACTAGACCATCACATGAAAGGTTGTATTATGGAAAAAATAAACGACGGTGCGCAA
GAAGAAGCAATGGATGAATTGCTCGTGACATTCCAAAAATTAATAAAAGATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2G7HWU1

Antitoxin

Source ID Structure
AlphaFold DB A0A0N1EPA7

References