Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2026008..2026155 | Replicon | chromosome |
| Accession | NZ_AP019687 | ||
| Organism | Klebsiella quasipneumoniae strain SNI47 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2026049..2026151 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2026008..2026155 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TMSI_RS10115 | 2021146..2023206 | + | 2061 | WP_101861959.1 | oligopeptidase B | - |
| TMSI_RS10120 | 2023210..2023869 | - | 660 | WP_101861958.1 | exodeoxyribonuclease X | - |
| TMSI_RS10125 | 2023948..2024178 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| TMSI_RS10130 | 2024291..2024665 | + | 375 | WP_101861957.1 | CopC domain-containing protein YobA | - |
| TMSI_RS10135 | 2024669..2025535 | + | 867 | WP_151819733.1 | copper homeostasis membrane protein CopD | - |
| TMSI_RS10140 | 2025552..2025890 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2026008..2026155 | - | 148 | - | - | Antitoxin |
| - | 2026049..2026151 | + | 103 | - | - | Toxin |
| TMSI_RS10150 | 2026530..2026673 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| TMSI_RS10155 | 2026774..2027742 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| TMSI_RS10160 | 2027899..2028552 | + | 654 | WP_023290232.1 | protein-serine/threonine phosphatase | - |
| TMSI_RS10165 | 2028549..2028740 | - | 192 | WP_002911395.1 | YebW family protein | - |
| TMSI_RS10170 | 2028838..2029077 | - | 240 | WP_002911393.1 | YebV family protein | - |
| TMSI_RS10175 | 2029193..2030623 | - | 1431 | WP_044523969.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T32888 NZ_AP019687:2026049-2026151 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT32888 NZ_AP019687:c2026155-2026008 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
