Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2785296..2785440 | Replicon | chromosome |
| Accession | NZ_AP019634 | ||
| Organism | Enterobacter sp. 18A13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2785302..2785405 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2785296..2785440 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOY93_RS13530 | 2780450..2781898 | + | 1449 | WP_197737685.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FOY93_RS13535 | 2782006..2782245 | + | 240 | WP_008500472.1 | YebV family protein | - |
| FOY93_RS13540 | 2782280..2782924 | - | 645 | WP_111964804.1 | protein-serine/threonine phosphatase | - |
| FOY93_RS13545 | 2783092..2784033 | + | 942 | WP_133294682.1 | VirK/YbjX family protein | - |
| FOY93_RS13550 | 2784207..2785103 | + | 897 | WP_143345259.1 | benzoate transporter | - |
| - | 2785296..2785440 | + | 145 | - | - | Antitoxin |
| - | 2785302..2785405 | - | 104 | - | - | Toxin |
| FOY93_RS13555 | 2785544..2785882 | - | 339 | WP_111964807.1 | YebY family protein | - |
| FOY93_RS13560 | 2785899..2786768 | - | 870 | WP_133294684.1 | copper homeostasis membrane protein CopD | - |
| FOY93_RS13565 | 2786770..2787141 | - | 372 | WP_115875680.1 | CopC domain-containing protein YobA | - |
| FOY93_RS13570 | 2787279..2787509 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| FOY93_RS13575 | 2787620..2788270 | + | 651 | WP_133294685.1 | carbon-nitrogen hydrolase family protein | - |
| FOY93_RS13580 | 2788295..2788957 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T32803 NZ_AP019634:c2785405-2785302 [Enterobacter sp. 18A13]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT32803 NZ_AP019634:2785296-2785440 [Enterobacter sp. 18A13]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
