Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1777590..1777734 | Replicon | chromosome |
| Accession | NZ_AP019632 | ||
| Organism | Enterobacter asburiae strain 1808-013 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1777625..1777728 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1777590..1777734 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOY96_RS08420 | 1774074..1774736 | - | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
| FOY96_RS08425 | 1774761..1775411 | - | 651 | WP_048979922.1 | carbon-nitrogen hydrolase family protein | - |
| FOY96_RS08430 | 1775522..1775752 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| FOY96_RS08435 | 1775889..1776260 | + | 372 | WP_143346833.1 | CopC domain-containing protein YobA | - |
| FOY96_RS08440 | 1776262..1777131 | + | 870 | WP_143346834.1 | copper homeostasis membrane protein CopD | - |
| FOY96_RS08445 | 1777148..1777486 | + | 339 | WP_033145840.1 | YebY family protein | - |
| - | 1777590..1777734 | - | 145 | - | - | Antitoxin |
| - | 1777625..1777728 | + | 104 | - | - | Toxin |
| FOY96_RS08450 | 1777926..1778822 | - | 897 | WP_143346835.1 | benzoate transporter | - |
| FOY96_RS08455 | 1778996..1779937 | - | 942 | WP_094935590.1 | VirK/YbjX family protein | - |
| FOY96_RS08460 | 1780104..1780748 | + | 645 | WP_033145837.1 | protein-serine/threonine phosphatase | - |
| FOY96_RS08465 | 1780783..1781022 | - | 240 | WP_008500472.1 | YebV family protein | - |
| FOY96_RS08470 | 1781129..1782577 | - | 1449 | WP_197736965.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T32790 NZ_AP019632:1777625-1777728 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT32790 NZ_AP019632:c1777734-1777590 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
